Pairwise Alignments

Query, 638 a.a., penicillin-binding protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., Peptidoglycan D,D-transpeptidase MrdA from Azospirillum sp. SherDot2

 Score =  353 bits (905), Expect = e-101
 Identities = 213/606 (35%), Positives = 324/606 (53%), Gaps = 21/606 (3%)

Query: 15  THLFRNRAIVSFVGILICMGLLVTNLYNIQINQYQDYKTRSNDNRIKVVPIAPNRGLIFD 74
           + L   RA+V     L  +  LV  LY +Q+ +   Y   + +NRI +  IAP+RG I D
Sbjct: 11  SRLLARRALVLGGIKLAGLSALVGRLYYLQVVESARYTMLAEENRISLRLIAPSRGNIVD 70

Query: 75  RNGVLLAENRPVFNLEVIPEKVPNMEETIARLQQLIEISPEKLAAFEKERKQTRRFNSVP 134
           R GV LA N+  + + V+ E+  N++ET+ ++ +++ ++        +E  + RRF  V 
Sbjct: 71  RFGVPLAVNQQNYRVVVVSERTHNIQETLDKISRIVPLTDGDRRRVLRELHRKRRFVPVT 130

Query: 135 LLTQLTDDEVAKFSVNQHKFPGVSVTANLKRYYPYGEVLTHVIGYVSRINDKDLERLDKE 194
           +   LT ++VA    N    PGVS+     RYYP  +   H++GYV  +++ +L      
Sbjct: 131 VRENLTWEQVATLETNTPDLPGVSIEVGELRYYPQADWTAHILGYVGAVSESELS--GNS 188

Query: 195 GKKANYQATRDIGKLGIERYYEDLLHGTAGYQEVEVNSRGRVIRTLKYVPPIPGKDIVLN 254
               +    R IGK GIE+++E +L GTAG  ++EVN+ GRVIR L       G+++ L 
Sbjct: 189 DPVLSLPGFR-IGKAGIEKFHEKVLRGTAGTSQLEVNAVGRVIRELSRDEGQSGREVQLT 247

Query: 255 LDIELQLYAYKLLEGR-RGSIVALDPKDNGVLAMASSPSYDPNAFVHGISGKAYSDLLND 313
           +D+ LQ +  + L      S V +D    G+ A+ S PSYDPN F  GIS + + +LL++
Sbjct: 248 IDMALQRFVQERLSQEVSASAVVMDVHTGGIYALCSHPSYDPNQFTMGISAELWEELLSN 307

Query: 314 KRRPLVNRTTLGIYPPGSTVKPFIAVSALQDGIITPNTTRNDPGYWRIPNTDTRPFRDWL 373
           +  PL N+  +G YPPGST K   A++AL+ G+++   T   PG+  + +     F  W 
Sbjct: 308 QATPLNNKAVVGQYPPGSTFKMMAALAALESGVVSNRHTVFCPGHLELGD---HRFHCWK 364

Query: 374 RWGHGRVDIIKSLEESVDTFFYQIAYDMGIDKLSSWMMRFGFGDLTGIDIYEESKANMPT 433
           R GHG +D + +L  S D FFY ++  +GID+++    RFG G  TGID+  E    +P+
Sbjct: 365 RGGHGTIDFVGALRHSCDVFFYDVSRRIGIDRIAEMSNRFGLGSRTGIDLPHERAGLIPS 424

Query: 434 REWKMARHKVPWYQGDTIPVGIGQGYWTATPMQIAKATSVLVNHGKVIAPHLLRATIDNG 493
             WK A     W  G+T+   IGQGY   TP+Q+A  T  L N G  + PHL +      
Sbjct: 425 IAWKKATLGKNWDMGETLVASIGQGYVLTTPLQLAVMTCRLANGGYAVKPHLTK------ 478

Query: 494 EQFSTQKETEYTTYPPIDGVPKKYWDMAIHGMYLVNHGAKGTA-RRAFQNMPYESAGKSG 552
            Q  T    E T +P I GV K+  D+ + GM  V +   GTA +     + YE AGK+G
Sbjct: 479 -QIKT-VSGEQTAWPSI-GVKKENLDIVLRGMTEVTNAPNGTAFKSRITEVGYEMAGKTG 535

Query: 553 TAQVFGLAEGQKYNASELAEHL----HDHALFTGFAPVKDPKVIVTFVLENGGGGSSNGA 608
           +AQV  +   ++    +  E L     DHALF  FAP++ P+      +E+GGGGS+  A
Sbjct: 536 SAQVRRITMAERNTGVKKNEDLPWRERDHALFVAFAPIQAPRYACAVFVEHGGGGSTAAA 595

Query: 609 PVVRQI 614
           P+ R I
Sbjct: 596 PIARDI 601