Pairwise Alignments

Query, 373 a.a., rod shape-determining protein RodA from Vibrio cholerae E7946 ATCC 55056

Subject, 404 a.a., lipid II flippase from Pseudomonas putida KT2440

 Score =  178 bits (452), Expect = 2e-49
 Identities = 112/359 (31%), Positives = 187/359 (52%), Gaps = 18/359 (5%)

Query: 19  IDLPLLLGVLALMGFGLVVMYSAS--------GQSLAMMDRQAMRMAMALIIMVILAQIP 70
           +D P+L G LAL+G GLV++ SAS        G  L  M R  + + + L+       +P
Sbjct: 21  LDFPMLAGCLALLGLGLVMITSASSEVAAVQSGNPLYHMFRHLVYVFLGLVACGATMLVP 80

Query: 71  PRTYESAAPILFFCGVILLVCVLL--FGEISKGAQRWLDLGFVRFQPSELLKLAVPLMVA 128
             T++    ++      LLV VL+   G    G+ RW+   F   QPSE+ K+ V + +A
Sbjct: 81  IATWQRMGFMMLLGAFGLLVLVLVPGIGREVNGSMRWIGFSFFNVQPSEIAKVFVVIYLA 140

Query: 129 RYIGKHA--LPPSFKTLFASLVMVFVPTILIAKQPDLGTSILIAASGIFVIFLAGISWKL 186
            Y+ +    +  ++   F   +++     L+  +PD G ++++  +   ++FL G+   L
Sbjct: 141 GYLVRRQTEVRETWMGFFKPFIVLLPMAALLLMEPDFGATVVMMGAAAAMLFLGGVG--L 198

Query: 187 ITAAAVAIGAFVPVLWFFLMHEYQKTRVRTLFDPESDPLGAGYHIIQSKIAIGSGGLSGK 246
              + + + A + V        Y+  R+ T  DP +D  G+GY + Q+ IA G G   G 
Sbjct: 199 FRFSLMVVLAVLAVFVLVQAQPYRMARLITFTDPWADQFGSGYQLTQALIAFGRGEWLGV 258

Query: 247 GWLHGTQSQLEFLPERHTDFIFAVIAEEWGMIGILVLLSLYLFIIGRGLYL---ASHAQT 303
           G  +  Q Q  +LPE HTDF+F+V+AEE G++G L+ ++L++F+  R LY+   A  A+ 
Sbjct: 259 GLGNSVQKQF-YLPEAHTDFVFSVLAEELGVVGSLLTVALFVFVTVRALYIGLWAEKAKQ 317

Query: 304 SFGRMMAGSIVLSFFVYVFVNIGMVSGILPVVGVPLPLISYGGTSMVTLMAGFGILMSI 362
            F   MA  +   +     +NIG+  G+LP  G+ LP +SYGG+S+V   A  G+L+ I
Sbjct: 318 FFAAYMAFGLAFLWIGQFLINIGVNVGLLPTKGLTLPFLSYGGSSLVICCACVGLLLRI 376