Pairwise Alignments

Query, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) from Escherichia coli BW25113

 Score =  416 bits (1068), Expect = e-121
 Identities = 210/392 (53%), Positives = 283/392 (72%), Gaps = 6/392 (1%)

Query: 4   SILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLS 63
           S+L+ + A S  L +  + TAFA+   T +AP + A+ ++LMDY SGKVLAE   D KL 
Sbjct: 6   SLLRGLAAGSAFLFL-FAPTAFAAE-QTVEAPSVDARAWILMDYASGKVLAEGNADEKLD 63

Query: 64  PASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFP---DSSKMFVEVGTTVKVSD 120
           PASLTK+MTSYV+GQ +K   I L D V + K+AWA   P    SS MF++ G  V V+D
Sbjct: 64  PASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVAD 123

Query: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
           LN+G+IIQSGNDAC+A+A++VAG++++F+ LMN +A  LG+ N+ F   HGLD P  +ST
Sbjct: 124 LNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFST 183

Query: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
             D+ALLG+ALI DVPEEYAI+ E++FT+N I Q NRN LLW  ++NVDG+KTG T+GAG
Sbjct: 184 ARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAG 243

Query: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
           YNLV+SAT+G+MRL++VV+G   +  R  ES+KLL++GFRFFETV P K   TFV + +W
Sbjct: 244 YNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVW 303

Query: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVL-EKQLKAPLKKGDIVGTLYYQLAGNDI 359
            GDK  + LG  +   VT+PRGQ K+L AS+ L E QL APLKKG +VGT+ +QL G  I
Sbjct: 304 FGDKSEVNLGAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQLNGKSI 363

Query: 360 AQYPLLALEDVQEGSLFSRLWDYLVLLFKSWF 391
            Q PL+ +E+V+EG  F R+WD++++ F  WF
Sbjct: 364 EQRPLIVMENVEEGGFFGRVWDFVMMKFHQWF 395