Pairwise Alignments

Query, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b from Escherichia coli BL21

 Score =  332 bits (850), Expect = 1e-95
 Identities = 173/383 (45%), Positives = 252/383 (65%), Gaps = 6/383 (1%)

Query: 6   LKSVLASSITLSITLSSTAFASPIV--TPDAPQIAAKGYVLMDYHSGKVLAEKEMDTKLS 63
           +K  L  + +L +   S+ FA+  +  +P  P+I A  +VLMDY +G++L       + +
Sbjct: 1   MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60

Query: 64  PASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFP---DSSKMFVEVGTTVKVSD 120
           PASLTK+MT YV+ + +    I+ +D V + ++AWAK+ P    SS MF++ G  V V D
Sbjct: 61  PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120

Query: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
           L+RG+I+ SGNDACVA+A+++AG +  FV++MN +A  L +K++HF   HGLD P  +S+
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180

Query: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
            YDLA+L +A+I   PE Y +YSE+  T+NGITQ NRNGLLWDK+MNVDG+KTGHTSGAG
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240

Query: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
           +NL++SA +G  RL+AVVMG D+   R+ E+KKLL +G + F TV      +    E IW
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300

Query: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLE-KQLKAPLKKGDIVGTLYYQLAGNDI 359
            GDK+ IALG +++ ++ LP+ +   + A + L  K+L AP+     VG +        +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAPISAHQRVGEIELYDRDKQV 360

Query: 360 AQYPLLALEDVQEGSLFSRLWDY 382
           A +PL+ LE V EGS+FSRL DY
Sbjct: 361 AHWPLVTLESVGEGSMFSRLSDY 383