Pairwise Alignments

Query, 391 a.a., D-alanyl-D-alanine carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., penicillin-binding protein from Agrobacterium fabrum C58

 Score =  141 bits (356), Expect = 4e-38
 Identities = 91/234 (38%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 43  VLMDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNF 102
           +++D  SGKVL  ++ D    PASLTKMMT Y+  + +  G ISL+  V +S NA AK  
Sbjct: 55  IVIDAKSGKVLYGEDPDGLRYPASLTKMMTLYLTFEALNSGRISLDSRVTVSANA-AKEP 113

Query: 103 PDSSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMK 162
           P  SK+ V  G +V V      ++ +S ND   A+ EH+ G+ED F  +M A A +LGM 
Sbjct: 114 P--SKLGVRAGGSVTVEQAILALVTRSANDMATALGEHLGGSEDRFARMMTAKARALGMT 171

Query: 163 NSHFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLW 222
            + + N++GL +    +T  D A LG AL +  P+ Y  +S + F +      N N L+ 
Sbjct: 172 RTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGYFSTRTFNFGKQVIGNHNRLV- 230

Query: 223 DKSMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLS 276
                VDGIKTG+T  AG NL +SA      +VAVV+G  +  AR A  +KL++
Sbjct: 231 GTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVAVVLGGRSSAARDATMRKLVA 284