Pairwise Alignments

Query, 737 a.a., chain-length determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 738 a.a., lipopolysaccharide biosynthesis protein from Pseudomonas simiae WCS417

 Score =  474 bits (1220), Expect = e-138
 Identities = 265/721 (36%), Positives = 421/721 (58%), Gaps = 13/721 (1%)

Query: 8   QEEVIDIRQYFNVLLNYKWRILLFSVMVTAITLLFVLSMRSEYTARATILIESTQAKAVS 67
           ++++ID+ +++ ++   KW I     +++ +  L   ++   Y A A++LIE   AK +S
Sbjct: 19  EDDLIDLLKFWRIIWGRKWSIFGLVFVISLVAALAAFTVTPIYRAVASLLIEEKAAKVLS 78

Query: 68  IEEVYGLDTKSQEYYLTQIEILKSDTIAQEVIERLDLASDPEFDLSPESDASPSLKERLV 127
           IE++YG D  S EY  TQ E+LKS  +A+ V+  L L  + EFD  P    +P L   + 
Sbjct: 79  IEQIYGADGSSSEYLQTQFELLKSRALAERVVTELKLVDNREFD--PRQQPTPLLD--IA 134

Query: 128 EWMPFLQG-FKQEETVADPDLEAYRQNRLILYKFKRGMEISPIRKTQLVNIYYTAGDPKL 186
            W   L G F       D   E  ++   +   F   +++ P  K++LV +     DP+L
Sbjct: 135 AWKKSLSGLFGVPPAPLDGLEEQTKRFDEVTRAFMERVKVEPQGKSKLVKVQVEMADPRL 194

Query: 187 AAKIANEIARVYMDSHLEAKLEVELKANTWLNTRMEELRTQLRESEAKLQAFLQAEGLVD 246
           A   AN +A  +++  LEA   V L A +W+++R++ELR QL++SE  LQ + +AE LVD
Sbjct: 195 AMVAANALANGFIERQLEASQGVSLAAGSWMSSRLDELRGQLKDSEELLQRYREAENLVD 254

Query: 247 VQGVEGLATQELEELTSQMNKARDRRVAAETLYQVANSYSKNDSDLTALSSIPEISNHPT 306
           V GV  ++  EL +   +M  AR +R  AE+ Y+   S ++ND     L S+P +  HP 
Sbjct: 255 VGGVGTISAAELAQTGDRMIDARRQRAEAESQYRQVQSIARNDWQ--RLGSVPAVLGHPL 312

Query: 307 IRDLKVAEVDAERKVSEFSKRYGPKHPKLKSASAQLEAVRKNLRAELRQLLNGINNELQA 366
           I+  K  E  A  KV E SKRYG +HP +++A ++L A   +LR ++ Q++ GI    Q 
Sbjct: 313 IQQFKADEARARAKVEELSKRYGARHPAMEAARSELSAASGSLRGQIEQVVAGIERNYQL 372

Query: 367 AKQSERSLQTEFNQRKSEFQTLTVKNAKYSELKREVQTNRELFDLFLARQKETSASGDFN 426
           A+ ++ SLQ+ F+  KS  Q ++ K  K  EL+REV  NR L++ F  R KET+A+ D N
Sbjct: 373 AQANQTSLQSSFDANKSRIQEISRKEFKLRELQREVDANRTLYETFTNRLKETAATSDLN 432

Query: 427 TTIARFTDQASAPLTPSKPNKKLIVLLAFVVSFGFACVVAFIADAMTDTFADIKQVEKQL 486
           +  AR  D A  P  P+KP+K LIV +A +++F  A  +  + DA+ +TF   +Q+E  L
Sbjct: 433 SVTARVVDPAVLPDKPAKPHKALIVFIAAMLTFFVAAGLTLLLDALNNTFKTAQQIEDHL 492

Query: 487 ALSLLGVVPVVRKQRGKLDAKAYFDEKLRELTEAVRTIRTSYLLAHVNQDQHVVMLTSCL 546
            +S+LGV+P+V K      ++ +     R  +EAVR+IRT  +L+ ++    V+++TS +
Sbjct: 493 NISVLGVMPLVEKSYRNQMSQVFHRNLDRRFSEAVRSIRTGIVLSGIDNPHQVLLVTSSV 552

Query: 547 PGEGKTTSSLNLALSLAQMEKTLLIDCDLRKPAIAHRFGISGSQPGVTNLLNGTQSLEDC 606
           P EGK+  S++LA +L Q+++ LLID D+R+P++A  F      PG+ NLL GT + ++C
Sbjct: 553 PAEGKSALSISLACALGQLDRVLLIDADMRRPSLAKSFQFPAGTPGLANLLAGTATEQEC 612

Query: 607 VYHDEQSGLDILTAGVYASNPLELLSSSKFSELLADLRTRYQRIVIDTPPCLAVSDSFML 666
           +   + +G+D+L AG    NPLELLSS +F+ LL DL+ RYQRI+ D+ P   VSD+  L
Sbjct: 613 I--RQVNGIDVLCAGSVPPNPLELLSSPRFAALLNDLKGRYQRIIFDSAPTQVVSDALHL 670

Query: 667 AQYVDSVILVIDANHTRTPVVREVVGKLTQQGSRIDGVILNRLNAKKA----SRYSGYYH 722
           + YVD VI V     T  P+V + +G+L Q  + + G++LN+++  +A      Y GYY 
Sbjct: 671 STYVDFVIYVSKWAATPIPLVEKGIGQLLQNKAPVKGIVLNQMDFDQAKADGQSYDGYYE 730

Query: 723 Y 723
           Y
Sbjct: 731 Y 731