Pairwise Alignments

Query, 737 a.a., chain-length determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., orf, hypothetical protein (VIMSS) from Escherichia coli BW25113

 Score =  129 bits (324), Expect = 5e-34
 Identities = 109/487 (22%), Positives = 214/487 (43%), Gaps = 28/487 (5%)

Query: 270 DRRVAAETLYQVANSYSKNDSDLTALSS----------IPEISNHPTIRDLKVAEVDAER 319
           DR    + L  +A +Y + + +  +  +          +PE+ +   + + K+     ++
Sbjct: 238 DREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297

Query: 320 KVSEFSKRYGPKHPKLKSASAQLEAVRKNLRAELRQLLNGINNELQAAKQSERSLQTEFN 379
              +           + +  AQL  +     AE+ +L   ++   +   +  ++L+ E  
Sbjct: 298 DSVDLPLEAKAVLDSMVNIDAQLNELTFK-EAEISKLYTKVHPAYRTLLEKRQALEDEKA 356

Query: 380 QRKSEFQTLTVKNAKYSELKREVQTNRELFDLFLARQKETSASGDFNTTIARFTDQASAP 439
           +       +     +   L R+V++ ++++   L +++E   +        R  D A   
Sbjct: 357 KLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQ 416

Query: 440 LTPSKPNKKLIVLLAFVVSFGFACVVAFIADAMTDTFADIKQVEKQLALSLLGVVPVVRK 499
               KP K LI+L A ++    + +V  +  ++ +   +  QV ++  +S+   +P+   
Sbjct: 417 PGVLKPKKGLIILGAIILGLMLS-IVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEW 475

Query: 500 QRGKLDAKA------YFDEKLREL-------TEAVRTIRTSYLLAHVNQDQHVVMLTSCL 546
           Q+ +   K       Y   +L  +        EA+R++RTS   A +    +V+M+T   
Sbjct: 476 QKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVS 535

Query: 547 PGEGKTTSSLNLALSLAQMEK-TLLIDCDLRKPAIAHRFGISGSQPGVTNLLNGTQSLED 605
           P  GKT    NLA  ++Q  K  LLIDCD+RK    H    + +  G++ +L G   +  
Sbjct: 536 PSIGKTFVCANLAAVISQTNKRVLLIDCDMRK-GYTHELLGTNNVNGLSEILIGQGDITT 594

Query: 606 CVYHDEQSGLDILTAGVYASNPLELLSSSKFSELLADLRTRYQRIVIDTPPCLAVSDSFM 665
                  +  D++  G    NP ELL S +F+EL+      Y  ++IDTPP LAV+D+ +
Sbjct: 595 AAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAI 654

Query: 666 LAQYVDSVILVIDANHTRTPVVREVVGKLTQQGSRIDGVILNRLNAKKASRYSGYYHYQA 725
           + ++V + ++V          V   + +  Q G  + GVILN +  ++AS Y  Y +Y+ 
Sbjct: 655 VGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSI-FRRASAYQDYGYYEY 713

Query: 726 YYGEETK 732
            Y  + K
Sbjct: 714 EYKSDAK 720



 Score = 45.8 bits (107), Expect = 8e-09
 Identities = 28/106 (26%), Positives = 52/106 (49%)

Query: 174 LVNIYYTAGDPKLAAKIANEIARVYMDSHLEAKLEVELKANTWLNTRMEELRTQLRESEA 233
           ++++ YT  D +    I N IAR Y + ++E K     K+  +L  ++ E+R++L  +E 
Sbjct: 229 VLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAEN 288

Query: 234 KLQAFLQAEGLVDVQGVEGLATQELEELTSQMNKARDRRVAAETLY 279
           KL AF Q +  VD+          +  + +Q+N+   +      LY
Sbjct: 289 KLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY 334