Pairwise Alignments

Query, 737 a.a., chain-length determining protein from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., capsular exopolysaccharide family from Enterobacter asburiae PDN3

 Score =  137 bits (344), Expect = 3e-36
 Identities = 134/577 (23%), Positives = 244/577 (42%), Gaps = 95/577 (16%)

Query: 170 RKTQLVNIYYTAGDPKLAAKIANEIARVYMDSHLEAKLEVELKANTWLNTRMEELRTQLR 229
           + T ++++ +T  D      I N I R Y++ ++E K     K+  +L  ++ E+R  L 
Sbjct: 225 KDTGVLSMTFTGEDKDQIRDILNSITRNYLEQNVERKSAEAAKSLAFLAKQLPEVRAHLD 284

Query: 230 ESEAKLQAFLQAEGLVDVQGVEGLATQELEELTSQMNKARDRRVAAETLYQVANSYSKND 289
           ++E KL A+ Q +  VD      L  +    L S +N                      D
Sbjct: 285 DAENKLNAYRQDKDSVD------LPLEAKSVLDSMVNI---------------------D 317

Query: 290 SDLTALSSIPEISNHPTIRDLKVAEVDAERKVSEFSKRYGPKHPKLKSASAQLEAVRKNL 349
           + L  L+                       K +E SK Y  +HP  ++    L   R+ L
Sbjct: 318 AQLNELTF----------------------KEAEISKLYTKRHPAYRT----LLEKRRTL 351

Query: 350 RAELRQLLNGINNELQAAKQSERSLQTEFNQRKSEFQTLTVKNAKYSELKREVQTNRELF 409
             E  +L    N+ + A  ++++ +                       L R+V++ ++++
Sbjct: 352 EEEKAKL----NDRVTAMPKTQQEIV---------------------RLTRDVESGQQVY 386

Query: 410 DLFLARQKETSASGDFNTTIARFTDQASAPLTPSKPNKKLIVLLAFVVSFGFACVVAFIA 469
              L +Q+E   +        R  D A       KP K LI+L + ++    + +V  + 
Sbjct: 387 MQLLNKQQELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGSIILGLMLS-IVGVLL 445

Query: 470 DAMTDTFADIKQVEKQLALSLLGVVPVVRKQRGKLDAKA------YFDEKLREL------ 517
            ++ +   +  QV ++  +++   +P+   Q+ +   K       Y   +L  +      
Sbjct: 446 RSLFNRGIESPQVLEESGINVYASIPLSEWQKSRDSVKTIKGVKRYKQSQLLAVGNPTDL 505

Query: 518 -TEAVRTIRTSYLLAHVNQDQHVVMLTSCLPGEGKTTSSLNLALSLAQMEK-TLLIDCDL 575
             EA+R++RTS   A +    +V+MLT   P  GKT    NLA  ++Q  K  LLIDCD+
Sbjct: 506 AIEAIRSLRTSLHFAMMQAKNNVLMLTGVSPSIGKTFVCANLAAVVSQTNKRVLLIDCDM 565

Query: 576 RKPAIAHRFGISGSQPGVTNLLNGTQSLEDCVYHDEQSGLDILTAGVYASNPLELLSSSK 635
           RK    H    + +  G++ +L G   +            D++  G    NP ELL S +
Sbjct: 566 RK-GYTHELLGTNNVNGLSEILLGKGEISQSAKPTTVPKFDLIPRGQVPPNPSELLMSER 624

Query: 636 FSELLADLRTRYQRIVIDTPPCLAVSDSFMLAQYVDSVILVIDANHTRTPVVREVVGKLT 695
           F+EL+      Y  ++IDTPP LAV+D+ ++ ++  + ++V          V   + +  
Sbjct: 625 FTELVEWASKNYDLVLIDTPPILAVTDAAVVGRHAGTTLMVARYAVNTLKEVETSLSRFE 684

Query: 696 QQGSRIDGVILNRLNAKKASRYSGYYHYQAYYGEETK 732
           Q G  + GVILN +  ++A+ Y  Y +Y+  Y  ++K
Sbjct: 685 QNGIEVKGVILNSI-FRRATGYQDYGYYEYEYKSDSK 720



 Score = 27.3 bits (59), Expect = 0.003
 Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 12  IDIRQYFNVLLNYKWRILLFSVMVTAITLLFVLSMRSEYTARATILIESTQAKAVSIEEV 71
           IDI +    ++  KW +L  + +  A  +++ L     Y+A A + IE     ++ ++++
Sbjct: 18  IDIGRLVGTVVEAKWWVLGITAVFAAAAVVYTLFATPIYSADALVQIEQNTGNSL-VQDI 76

Query: 72  YGLDTKSQEYYLTQIEILKSDTIAQEVIERLDL 104
                        +I++++S  +  + +  L L
Sbjct: 77  GSALANKPPASDAEIQLIQSRLVLGKTVHDLGL 109