Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 269 a.a., Capsular polysaccharide biosynthesis/export periplasmic protein WcbA; Capsular polysaccharide export system protein KpsC from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 74.3 bits (181), Expect = 2e-18
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 4/112 (3%)

Query: 26  YRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGLLD- 84
           Y L  GD +R+QV+  P+L+ ETR++++G I +P +G +RL G ++   +  I D L   
Sbjct: 31  YPLAAGDTVRVQVFQNPDLALETRITESGTISFPLIGMVRLGGLSVSAAEKKIADALQSG 90

Query: 85  GYLINPNVSVSILEYRPFFVN--GQVMKPGSYPYH-PGLTVNKAITIAGGFT 133
           G+L NP V++ + + R   V+  GQV +PG +P    G  ++  +  AGG T
Sbjct: 91  GFLQNPQVTLLLTQIRGSQVSVLGQVGRPGRFPLETAGTRLSDMLANAGGTT 142



 Score = 47.4 bits (111), Expect = 2e-10
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 69  KTLEEVKTTIHDGLLDGYLINPNVSVSILEYRPFFVNGQVMKPGSYPYHPGLTVNKAITI 128
           KT++     + +   D  +++    + +     F+V G+  +PGS+    G+TV +A+  
Sbjct: 162 KTIDLPSLFLRENRADDIVLSSGDVIYVHRAPVFYVYGEAQRPGSFRIERGMTVMQALAQ 221

Query: 129 AGGFTERASKTNLFISSSDDPEAKPTKATLLSKL-QPGDILTVAESFF 175
           AGG T R S++ L +    D  +  T +  ++ L +  D+L V ES F
Sbjct: 222 AGGPTARGSRSRLELHRPQDDGSVQTLSPEMNDLVRSNDVLYVRESLF 269