Pairwise Alignments

Query, 175 a.a., polysaccharide biosynthesis/export family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., Polysialic acid transport protein KpsD precursor from Alteromonas macleodii MIT1002

 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 23  DDFYRLGVGDQIRIQVYDEPELSFETRVSDNGNIDYPFLGRIRLKGKTLEEVKTTIHDGL 82
           +D Y +  GD+I I ++     S    V + GNI  P +G IR+       V  T+   +
Sbjct: 131 NDNYLVAPGDKISIWLWGAVNFSDVVTVDNQGNIFIPNIGPIRVANTPAGSVNQTVTAKI 190

Query: 83  LDGYLINPNVSVSILEYRP--FFVNGQVMKPGSY 114
              Y  + NV V++L   P   FV+G V++PG Y
Sbjct: 191 RQVYTNDVNVYVNLLTSTPVSIFVSGPVLRPGQY 224



 Score = 41.2 bits (95), Expect = 3e-08
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 80  DGLLDGYLINPNVSVSILEYRPFF-VNGQVMKPGSYPYHPGLTVNKAITIAGGFTERASK 138
           +G +   L+ PN ++ I E      V G+V+ P S  ++P  T    +  AGGFTERA  
Sbjct: 483 NGDIANILLEPNDTIVIPEVTDLVHVGGEVLLPQSVVFNPEATTEDYVAWAGGFTERAED 542

Query: 139 TN-LFISSSDDPEAKPTKATLL----SKLQPGDILTV 170
              L +  + +       ++ L    SKL+PGD + V
Sbjct: 543 ERILIVRKNGNVTFTSINSSFLASNDSKLEPGDQIIV 579