Pairwise Alignments

Query, 398 a.a., TetR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., outer membrane beta-barrel protein from Dickeya dadantii 3937

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 91/376 (24%), Positives = 149/376 (39%), Gaps = 33/376 (8%)

Query: 39  GMAVVPF---LNLSTGYNDNLAKSNQQQD--SSAFSVIESGVGFIVEPQSSKTQLGYRFR 93
           G+A + F   + L  G+ +N+      QD  SS F  +   +  I      +  L Y   
Sbjct: 28  GVAGIDFQSQVGLDYGHENNVTYQADDQDAVSSNFQSVRPMIKAIGARYQDQYLLMYSGD 87

Query: 94  NGTYFSSQQDNFTDHYLDLTSDWELNSRHRIGFEYNLALAHE--GRGENDTTLGLDYNQY 151
              Y S   DN+TDH+      W    RH +       L HE  GRG  +      ++ +
Sbjct: 88  YRRYDSDSADNYTDHFFRFNGAWRYGLRHGLTLSLEETLGHEVRGRGITEGFRPQQFSDF 147

Query: 152 ESHS--------ANLGYGFGSTEAIGRIETNIGWQDFTYQNNRTITQY----------QD 193
             HS        + L Y +G+ +  G+ +  + ++         I             Q+
Sbjct: 148 GIHSPLSTALFNSELRYSYGALKGRGKADVALLFRKLRLGRTEDIKNTDIDFYNYVLGQE 207

Query: 194 WDELRFNSTFYYQALPRTSFIAQVIANSRRYDLIAPGASSKDNNHYFGYLGASWDATGKL 253
           W E    +    Q  P T F  + I N RRY++     S KDN+ Y+   G     TGK 
Sbjct: 208 WHENGLITELSDQYSPATRFRYRFIGNQRRYEI----DSQKDNDEYYLEYGIKSQLTGKT 263

Query: 254 RGNAKLGYQQKDFD-AASRKDFDSFSWDVDVTYLVRTYSALQLVTNRRSTDSDGDGDAID 312
             +A + +  K FD   + ++F   +WD+   +   T S   + T++   D    G  I 
Sbjct: 264 GIDANVSWLYKTFDNNPNSRNFSGVNWDIQAEWKPLTQSVFTVHTSQNIKDPSEIGGYIL 323

Query: 313 AATYQVNWSHNWNT-QWTTEAALTRLEEDYTASNRDDETTNA--SLRASYDFRRWLTFEL 369
            + Y +++ H W   +++T    + L + Y    RD +  N   +   SY+FR  +  EL
Sbjct: 324 VSKYGISYQHFWLVDRFSTTFDYSYLTDVYKNYPRDRKDRNRAFTFAMSYNFRPSINVEL 383

Query: 370 GVGRERKDSNIDSLSY 385
                   SN DS S+
Sbjct: 384 KYQLNTLRSNQDSDSF 399