Pairwise Alignments

Query, 438 a.a., polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., O-antigen polymerase from Pseudomonas simiae WCS417

 Score =  232 bits (591), Expect = 2e-65
 Identities = 148/438 (33%), Positives = 222/438 (50%), Gaps = 21/438 (4%)

Query: 1   MLSFHKTLFFAFLLFVFWLPIPLGSNRPWAWSLNEIYVAFLLLGCLFL-LPAAQCWLAIQ 59
           ++   + L FA L  + WLP+PLGSNR WA  L   +   + L  + + L + +      
Sbjct: 5   LIRLERMLVFAVLAVIVWLPLPLGSNRDWAIGLMAAFTGGITLAWVAVNLKSGKPVFGSS 64

Query: 60  RAKVILIPVA--LFTLWSWMQSWPSLGLSSDQTLVFISAVKSLHYLQICLVAALLVDTPH 117
             +++ +P+   L    +W+      GLS D    F   +  L Y  + ++   L  +  
Sbjct: 65  ATRMVAMPMLALLLACQAWVACQWLFGLSQDNGATFQYLMLGLVYCVLFVMVTGLFQSRR 124

Query: 118 KLKMLATTMIASGICQAFYAGVILLLELQTSPFF-SLPLNQRASGSFVYHNHLANFLMLN 176
           +L +L   ++ SG  QAFY   + L   +   F         A+GS+V  NH A +L + 
Sbjct: 125 RLTLLLAVLVISGTVQAFYGAWMTLSGTEWLAFTPKTAYIGDATGSYVNRNHFAGYLEMT 184

Query: 177 LCLGFGLLIAELNHQTTQGWRNTLKKLLAILLSDKAFIRLGLVIMVIALVLTRSRMGNIA 236
           L  G GLL+A L  + +  W N    LL +L+  KA +RL LVIMVIALV++ SRMGN+A
Sbjct: 185 LACGIGLLLA-LRDKRSFSWVN----LLQVLMGPKALLRLALVIMVIALVMSHSRMGNMA 239

Query: 237 FFVALSIGSLLILLFYKSKPKSLYLLIVSLFIVDALVVSNWFGLDKVRQRLAETSLQ--- 293
           FF +L I   + +++ +       L++ SL I+D LV+S +FGL +++ RL  T L    
Sbjct: 240 FFASLLIVGGVFVMYERRNRLRNSLILCSLIIIDVLVISQYFGLAQLKDRLVNTRLHDVQ 299

Query: 294 ---------NESRDDVVRDALNAIQERPLTGFGNGTFYSTFPSYNQGEVALFYDHAHNDY 344
                    NE R DV   A+  + ERP+ G G GTF + F       + L +DHAHNDY
Sbjct: 300 VNNEVVQSANEVRADVFGYAIPLLLERPMAGHGAGTFEAVFQQCPGSNIRLHFDHAHNDY 359

Query: 345 VQFTLESGLIATSVFGIMVLFCAWRALSAFRNRTNKTMRGIGLGSLMAIIGMLLHMSVDF 404
           +Q  +E GL  +    + V+F   +A  A  NR +    G+G  + M II +L+H S DF
Sbjct: 360 LQILIEFGLAGSFFLALFVVFALIQAFKALGNRQSIFRSGVGFAACMGIISLLIHSSTDF 419

Query: 405 PLQAPATALYFLFCLLIA 422
            LQ PA A  F+    IA
Sbjct: 420 NLQIPANATTFVILSAIA 437