Pairwise Alignments

Query, 438 a.a., polymerase from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., Lipid A core - O-antigen ligase from Alteromonas macleodii MIT1002

 Score =  314 bits (804), Expect = 4e-90
 Identities = 175/444 (39%), Positives = 258/444 (58%), Gaps = 33/444 (7%)

Query: 10  FAFLLF-VFWLPIPLGSNRPWAWSLNEIYVAFLLLGCLFLLPAAQCWLAIQRAKVILIPV 68
           F FLLF +FWLP+ LG+NRPWAW+L ++ + F + G L LL  +       + +  +I  
Sbjct: 12  FGFLLFTLFWLPLSLGANRPWAWALMQMSL-FSIGGTLVLLNTSLLHQLYTKYRTFIILW 70

Query: 69  ALFTLWSWM-----------------------QSWPS--------LGLSSDQTLVFISAV 97
            +F  W  +                       + W +        L LS D     ++  
Sbjct: 71  VIFLAWQLINIVPLPFALVEAIRPERVSYLLSEQWGNQENVTSKWLSLSFDVGQSDVTFF 130

Query: 98  KSLHYLQICLVAALLVDTPHKLKMLATTMIASGICQAFYAGVILLLELQTSPFFSLPLNQ 157
           KSL Y  +  +A  L+++  +L+     + A+GI QA Y  + +L  ++ S  F  P++ 
Sbjct: 131 KSLAYCFLFFIALTLINSAKRLRYTLIVISAAGIFQAIYGALEVLSGIKYSLVFKQPVSH 190

Query: 158 RASGSFVYHNHLANFLMLNLCLGFGLLIAELNHQTTQGWRNTLKKLLAILLSDKAFIRLG 217
            A+GS++Y NH ANFLML L    G LIA L+   T   R  L++L+   LS+K   R+G
Sbjct: 191 IATGSYIYKNHYANFLMLCLSAAIGYLIASLHQDNTTTKRERLRRLVKFWLSNKVLFRIG 250

Query: 218 LVIMVIALVLTRSRMGNIAFFVALSIGSLLILLFYKSKPKSLYLLIVSLFIVDALVVSNW 277
           ++IMVIALV++RSRMGN AFF+A++I + L L+++K + KS   L +S+ I+D L+VS++
Sbjct: 251 IIIMVIALVMSRSRMGNSAFFIAMTITATLGLIYFKPRQKSYITLFISMLIIDILLVSSF 310

Query: 278 FGLDKVRQRLAETSLQNESRDDVVRDALNAIQERPLTGFGNGTFYSTFPSYNQGEVALFY 337
           FGL +V+QRL +T+   ESRD+V+ DAL  + E  L G G GTFY+ +P +    +  FY
Sbjct: 311 FGLKQVQQRLEQTNFAQESRDEVITDALPLLGEYGLIGTGGGTFYTVYPQFQSESIQHFY 370

Query: 338 DHAHNDYVQFTLESGLIATSVFGIMVLFCAWRALSAFRNRTNKTMRGIGLGSLMAIIGML 397
           DHAHN+Y+QF++E G++   V  ++VL C   ALSA RNR +   RG    S+MA IGM 
Sbjct: 371 DHAHNEYLQFSIEFGVVGAFVLALLVLLCTKNALSAVRNRRHPLPRGTAFASIMATIGMA 430

Query: 398 LHMSVDFPLQAPATALYFLFCLLI 421
           LH SVDFPLQAPA    F+  L +
Sbjct: 431 LHSSVDFPLQAPANTAIFIVLLAL 454