Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1027 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5

 Score =  553 bits (1424), Expect = e-161
 Identities = 331/1015 (32%), Positives = 542/1015 (53%), Gaps = 22/1015 (2%)

Query: 4    SDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQI 63
            +D+ ++RPV A+V+S+++ V G+ + + + + + P  ++ +V+VST Y GA   ++   I
Sbjct: 5    TDIFIRRPVLAIVVSLMILVLGLRAMSSMPILQYPRTQNAIVTVSTTYPGADPDVVAGFI 64

Query: 64   TSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEA 123
            T+ LE+ +A  +GID +TS S  G S IT    L YD    +++I   V      LP   
Sbjct: 65   TTPLENAIAQANGIDYMTSTSTTGTSTITANLRLNYDTGKALTEINTKVNSVLNQLPSGT 124

Query: 124  DDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKV 183
              P +    G    ++YI   S  +   Q+TDY+ RV+  +   + GV + ++ G     
Sbjct: 125  QQPVLTVKVGQTIDAMYIGFRSDAIAGNQITDYLIRVVQPKLQAVQGVQTAELLGSKTFA 184

Query: 184  MYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFEYL 243
            M   + P  +A  GV  S++S AL + +  +  G  +     +++  +    + E+F  L
Sbjct: 185  MRAWLDPIRLAAYGVTASEVSTALTRNDYIASLGNTKGQMVQVNLTASTSLHNVEEFRNL 244

Query: 244  VVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHEE 303
            +VK A+ G  + LKDVA+V +GA++ +S    DG  +V +GI     AN L+V K V   
Sbjct: 245  IVKEAN-GAIVRLKDVANVTLGADDYDSATMFDGRESVYIGIQIAPTANLLDVIKGVRAV 303

Query: 304  VDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATLIPA 363
            +  ++  LP G  + + YDS+ F+  SI EV  TL     +V LV++ F+G  R+ LIP 
Sbjct: 304  LPDIESQLPTGLSMGVIYDSSAFVNSSIEEVIHTLVEALAIVTLVVFAFLGSWRSVLIPV 363

Query: 364  VTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKPLLA 423
            + +P+SLI  F+    FGFSINL+TL+AL+L+IGLVVDDAI+VVE++ HH+E G   L A
Sbjct: 364  IAIPLSLIGTFLMMLAFGFSINLLTLLALVLAIGLVVDDAIIVVESVNHHMEEGMSALQA 423

Query: 424  AYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTP 483
            A+   R++   +IA T+VL+ V++PI F  G+ G LFTEF+  L  AV  S+++ALTLTP
Sbjct: 424  AFASARQLANPIIAMTVVLIAVYVPIGFQGGLTGALFTEFAFTLVGAVTISAVVALTLTP 483

Query: 484  VLGSKLLKANVKPG-----RFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGG 538
            ++ + +LK     G     R    +DR+   + + Y + ++ A+ +     V     +  
Sbjct: 484  MMSAYMLKPVDHAGGDLESRMVLAVDRVMGAVTAAYSRSLTGALNYMPVTAVFAGLVLCS 543

Query: 539  SYGLMQLVPAQLTPSEDRGVIFS-FVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSF 597
             Y L     ++L P ED+G+I +  +   +AT   ++  N    E          F K  
Sbjct: 544  VYWLYGTAQSELAPEEDQGIILAQSISAPNATLQQKLLYNRQTYET---------FAKHP 594

Query: 598  SIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMPGFRG 657
              ++     + G  T     +L+ W++R  T +     +++ L  I   ++  F      
Sbjct: 595  ETETVFQVESTG--TSIAGWVLKPWDERKATTKSLQPMIQQELNAIAGQKIVAFQTSPLP 652

Query: 658  GSNE-PVQFVLGGSD-YSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715
            GSN  P+Q V+G SD + +L   A K  +EA  +      + D     P+  + ID+++ 
Sbjct: 653  GSNGLPMQIVIGTSDGFDKLNEVAAKFMQEALDTGLFIFLNNDLKIDQPQASIVIDREKT 712

Query: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775
            + LG+S+  +   L  +LGG  V  F   G  Y V  +  + +  N   +   YMR + G
Sbjct: 713  SLLGLSMSDVGGALSSLLGGGYVNYFSLDGRSYKVIPQVKQEARLNTDQVLDYYMRMSDG 772

Query: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDI 835
             ++ L TV RI+       L H+ +  + TI   +  G T G A+  L   A+  LP   
Sbjct: 773  TMIPLSTVARIETKTVPESLNHFQQVNAATIAGVVAPGVTTGDAITVLKDLAKRTLPTGY 832

Query: 836  SVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGG--F 893
            ++ + G S+ + +        FA AL+V +L LAA F SF +P+V++L+VPM + G   F
Sbjct: 833  TLDFGGASRQYVQESGGFVTTFAFALIVIFLSLAALFNSFRDPVVILLSVPMSLAGALLF 892

Query: 894  LGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRP 953
            + + + G  +NIY+Q+G+  L+G+++K+GIL++E AN+L+  G    +AII+A+  RLRP
Sbjct: 893  ISVGIGGASINIYTQVGLTTLMGLISKHGILMLEVANELQLDGKSKREAIIEAATLRLRP 952

Query: 954  ILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLI 1008
            ILMT    + G +PLI ++GAG  SR  +G VI  G+   TL TL V+P  Y L+
Sbjct: 953  ILMTTAAMVLGVVPLIFASGAGAASRFNLGLVIATGLAIGTLFTLYVVPTAYVLM 1007