Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1069 a.a., Efflux pump membrane transporter BepE from Xanthobacter sp. DMC5

 Score =  490 bits (1261), Expect = e-142
 Identities = 328/1032 (31%), Positives = 534/1032 (51%), Gaps = 27/1032 (2%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   ++RPV + VL+++  + G+VS  +L V + P+I  P VSVST Y GASA  +   
Sbjct: 2    ISRFFIERPVLSNVLALVFVLIGLVSLIRLPVSQYPNIVPPTVSVSTSYPGASAKTMIDT 61

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +   +E Q+ G+ G+  + S S + G   + V+F +G D N     +++ V  A  SLP 
Sbjct: 62   VALPIEQQVNGVEGMIYMQSWSASDGTYTLVVSFAIGTDPNMAQVLVQNRVNIALASLPT 121

Query: 122  --EADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
              +A    + +   S    V +       D   L +Y    + +    + GV++V V G 
Sbjct: 122  AVQAQGVTILQKGTSILEFVTLISPDGRYDGLFLNNYAIINIQNELERVDGVANVAVFGA 181

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQV------RNDSTVMSVRTARG 233
                M V + P+ M   G+  +D+S+A+ K++     GQ+       N S   +V  +  
Sbjct: 182  GTYAMRVWMDPDRMQAFGLTPTDVSNAIQKQSQIVTPGQLGLPPAPSNASFQYTVNVSGR 241

Query: 234  YQSAEDFEYLVVK--RASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDA 291
                +D+E ++VK   +  G  + ++D+  V +GA++ +  F  D      +GI     A
Sbjct: 242  LDDVKDYENIIVKVDNSDGGRIVRIRDIGRVELGAQSYSKDFMQDNKPAAGIGIFQLPAA 301

Query: 292  NPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYI 351
            N L+VAKRV  +++ +++  P+G   AI +D+T+F+  SI EV+ TLF    LV++V+ +
Sbjct: 302  NALDVAKRVAAKMEDLKKNFPEGLDYAIPFDTTLFVTASIDEVWKTLFEAAILVLVVILL 361

Query: 352  FIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIF 411
            F+   RATL+PA TVPV++I AF A    GF+INL TL A+IL+IG+VVDDAIV+VE + 
Sbjct: 362  FLQDWRATLVPATTVPVTIIGAFAAMDAMGFTINLSTLFAIILAIGIVVDDAIVIVEGVA 421

Query: 412  HHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAV 471
             HIE G     AA K   E+   V+  TLVL+ VFLP SF+ G+ G +F +F++++A   
Sbjct: 422  RHIEEGMAGQPAAEKAMDELFGPVVGITLVLMSVFLPASFIPGLSGQMFKQFALVIAATA 481

Query: 472  IFSSLIALTLTPVLGSKLLKANVKPGRFNQL---IDRLFARLESGYRQVVSRAIRW-RWA 527
              S++ A TL P   +  L+  V P + N +    + ++ + E  Y  V+SR +   +  
Sbjct: 482  FISAINAATLKPTQCALWLRQPVPPEKRNFIYRGFNAIYGKAEHWYTGVISRMVHHSKLM 541

Query: 528  APVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMP 587
              + IA      YGL + +P    P ED+G   + V+  DA++ NR    M  V +R+  
Sbjct: 542  VLIAIALMSVAGYGLTR-IPTAFLPIEDQGYFLAHVQLPDASNLNRTKKVMADVSERIRK 600

Query: 588  LLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVT-AQEALS---QVRKALAGI 643
            + G   + + S  S     +     G   + L  W+ R  T  Q+ LS    + KA+AG+
Sbjct: 601  VPGVQTVLAISGISVLDNSSTLANAGVTYITLTPWDVRYATKGQDLLSMYENLGKAVAGV 660

Query: 644  PDVRVFPFMP------GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADI 697
             +  V   +P      G   G     Q   G  DY  L+     + ++      ++    
Sbjct: 661  EEAEVVILVPPAIQGIGNAAGFTMQPQIRNGNFDYQLLEQITASMVDKGRAQSALSHVSS 720

Query: 698  DYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDEN 757
             +    P++ V +++ +A  LGI+V  +  T+   LG   V    + G  + VY++ D  
Sbjct: 721  SFRAGAPQIQVEVNRIKAETLGITVGQVFSTISAYLGSTYVNQINKFGNVFQVYIQADAG 780

Query: 758  SFNNAADLSQIYMRTAT-GELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTL 816
                 ADL Q+ +R+ T   ++ L TV  I        ++ YN   S TI     AG++ 
Sbjct: 781  FRVTPADLMQLKVRSPTQNAMIPLGTVVDIKMTLGPPLISLYNLYPSSTIVGTNAAGFSS 840

Query: 817  GQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFI 876
            GQAL  ++Q A   LP      ++  S   K   + +  VF LA+L+ Y VLA Q+ES+I
Sbjct: 841  GQALSLMEQIAASTLPPGTGFEWTAMSYQEKAVGNQIYYVFGLAILLVYFVLAGQYESWI 900

Query: 877  NPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG 936
             P+ V+L VP+ + G    L  +G   N+Y+QIG+++LI + +KN ILIVE+A + R  G
Sbjct: 901  QPMSVILAVPLALLGTVSALLGLGVANNLYTQIGLVLLIALASKNAILIVEYAREKRAEG 960

Query: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996
            +E   A ++AS  R RPILMT+F  + G +PL+ +TGAG  SR ++G  +  GM  +T +
Sbjct: 961  MEIMDAAVEASRLRFRPILMTSFAFILGVLPLVFATGAGANSRKSIGIAVVSGMLASTCL 1020

Query: 997  TLLVIPAMYRLI 1008
             +L +P+ Y ++
Sbjct: 1021 AVLFVPSFYTVL 1032