Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1044 a.a., multidrug transporter from Pseudomonas simiae WCS417

 Score =  504 bits (1299), Expect = e-146
 Identities = 331/1036 (31%), Positives = 544/1036 (52%), Gaps = 47/1036 (4%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RP+ A V+++++ + G +S ++L + + PDI  P V +S  Y GASA  +E  +T V+
Sbjct: 6    IDRPIFAWVIAIVIMLGGSLSISQLPLEQYPDIAPPTVKISATYTGASAKTVEDSVTQVI 65

Query: 68   EDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDP 126
            E Q+ G+  +  +++ S + G + I++TF  G D +     +++ + +A+  LP+     
Sbjct: 66   EQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQAESRLPQSVQSE 125

Query: 127  QVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVM 184
             +    G     + + L+S +  +  TQ+ DYI   LLD  S I GV  V   G  Y  M
Sbjct: 126  GLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVGDVQTLGSGY-AM 184

Query: 185  YVRIKPELMAGRGVATSDISDALNKENLESPGGQ------VRNDSTVMSVRTARGYQSAE 238
             + + P L+    +  SDIS AL  +N E   GQ      ++      ++      Q+ +
Sbjct: 185  RIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGALPAIKGQQLNATISARSKLQTVD 244

Query: 239  DFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAK 298
            +F  +VVK  SDG  + L DVA + +G+E+ + +   +G    +MG+   + AN L V K
Sbjct: 245  EFRKVVVKSNSDGAVVLLGDVATLELGSESYDISTALNGKPAAAMGVQLAAGANALNVGK 304

Query: 299  RVHEEVDKVQQFLPKGTRL--AIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQL 356
             V  ++ +++ F P   +L   I YD+T F+  SI EV   L     LV+L++++F+  L
Sbjct: 305  AVKAKLKEMEPFYPTEMQLKNVIAYDTTPFVSLSIEEVVKALGEAIVLVVLIMFLFLQSL 364

Query: 357  RATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIER 416
            RATLIPA+TVPV L+  F     FG+SIN +T+ A++L+IGL+VDDAIVVVEN+   +  
Sbjct: 365  RATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERLMGE 424

Query: 417  GEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSL 476
            G  P+ A  +  RE+  A++  TLVL  VF+P++F  G  G+++ +FSV +  A++ S L
Sbjct: 425  GLSPVAATRQSMREISGALVGITLVLSAVFIPMAFFGGSTGIIYRQFSVTIVSAMVLSVL 484

Query: 477  IALTLTPVLGSKLLKANVKPGR-----FNQLIDRLFARLESGYRQVVSRAIRWRWAAPVV 531
            +A+TLTP L + LLKA    G      F    +R F R  +GY + V   +R RW   ++
Sbjct: 485  VAMTLTPALCATLLKARNGKGHGAQHGFFGWFNRTFERASAGYERWVGVVLR-RWGRSLL 543

Query: 532  IAACIGGSYGLMQLVPA--------QLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQ 583
            +       YGL+ +V A           P ED+G++ + ++     + +R  A   +++Q
Sbjct: 544  L-------YGLVLVVMAVGYVSLATSFLPDEDQGILLAQIQLPVGATDSRTQA---VIKQ 593

Query: 584  RLMPLLGQGFLKS-FSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRK---A 639
                +L Q  +++  SI     GGN+   T    + L+DW++R  + Q A +  ++   A
Sbjct: 594  FEDYILQQPEVEAMISISGLGMGGNS-QNTARAFIRLKDWSERGGSGQGAAAIAQRATLA 652

Query: 640  LAGIPDVRVFPFMPGFRGGSNEPVQF-----VLGGSDYSELKTWAEKLEEEAEKSPFMTG 694
            L+ I D   F   P    G  +   F      LGG  +  L    E+  E A K   + G
Sbjct: 653  LSSIGDADAFVMQPPTVRGLGQSSGFDLQLKDLGGLGHDALVAAREQFLELARKDARLLG 712

Query: 695  ADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRG 754
               +  +  P+L V+ID ++A  L +S   I+ TL   LGG  V  F+ +G    VY++G
Sbjct: 713  VRSNGLDDAPQLKVSIDDRKAGALSLSTSDINSTLATALGGTYVNDFLNQGRVKKVYVQG 772

Query: 755  DENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY 814
              +S   AADL   ++R +  E+V   +         +  L  YN   S+ I  +   G 
Sbjct: 773  QASSRMQAADLDHWFVRNSNNEMVPFSSFASSTWGYGSPLLERYNGNASLEIVGDPAPGV 832

Query: 815  TLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFES 874
            + G A+  ++   ++ LP  I   ++G+S   + + S   +++ +++L  +L LAA +ES
Sbjct: 833  SSGDAMAAVEAIVRQ-LPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLAALYES 891

Query: 875  FINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRD 934
            +  P  V+L VP+GV G  L   V G   ++Y Q+G++  +G+  KN ILIVEFA  L++
Sbjct: 892  WSVPFSVILVVPLGVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKHLQE 951

Query: 935  RGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFAT 994
            +G     A + A  +RLRPILMT+   + G +PL +STGAG   R A+GT +  GM  AT
Sbjct: 952  QGSSVIDATLVAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSAT 1011

Query: 995  LVTLLVIPAMYRLISG 1010
            ++ +  +P  + LI G
Sbjct: 1012 VLGIFFVPLFFVLIRG 1027