Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  471 bits (1213), Expect = e-137
 Identities = 325/1030 (31%), Positives = 527/1030 (51%), Gaps = 47/1030 (4%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RP+ A V+++++ + G +S   L + + PDI    VS++  Y GASA  IE  +T V+
Sbjct: 6    IDRPIFAWVIAIVIMLAGALSIGTLPLEQYPDIAPTKVSINATYTGASAKTIEDSVTQVI 65

Query: 68   EDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDP 126
            E ++ G+  +  ++S S + G +RI +TFE G + +     +++ + +AQ  LP+     
Sbjct: 66   EQKMKGLDRLVSMSSSSTSSGTARIELTFEAGTNADVAQMQVQNKLQQAQSQLPQSVQSQ 125

Query: 127  QVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVM 184
             V          + ++L S +     T + DYI   LLD  S I GV  V   G  Y  M
Sbjct: 126  GVTVTKSGTDFLMIVSLISQDGSATATDIGDYISSSLLDVISRIDGVGDVQTLGSGY-AM 184

Query: 185  YVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVR-----TARG-YQSAE 238
             + + P  +    +  SD+S AL  +N E   GQ+         R     TAR   ++A+
Sbjct: 185  RIWLDPAKLQKYSLMPSDVSSALTSQNTEVSAGQLGALPATAGQRLTATITARSKLRTAD 244

Query: 239  DFEYLVVKR-ASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVA 297
             F  ++VK  +S G  + L DVA + +G+E+       DG  +  MG+   + AN L V+
Sbjct: 245  QFREVIVKSDSSSGAIVRLGDVARIELGSESYTINSHFDGHPSAGMGVKLATGANALTVS 304

Query: 298  KRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLR 357
              V  ++ ++  F P   +  + YD+T F+  SI EV  TL     LV+L++Y+F+  LR
Sbjct: 305  NAVKAKLAELSPFFPNQMKAVVGYDTTPFVRISIEEVAKTLAEAMVLVVLIMYLFLQNLR 364

Query: 358  ATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI-ER 416
            ATL+PA+ VPV L+  F      G+SIN +T+  ++L+IGL+VDDAIVVVEN+   + E 
Sbjct: 365  ATLVPAIAVPVVLLGTFGVLSLLGYSINTLTMFGMVLAIGLLVDDAIVVVENVERLMTEE 424

Query: 417  GEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSL 476
            G  P  A  K   E+  A++   LVL  VF+P++F  G  G+++ +FSV +  A++ S L
Sbjct: 425  GLSPKEATRKSMSEITGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVAAMLLSVL 484

Query: 477  IALTLTPVLGSKLLKANVKPGR----------FNQLIDRLFARLESGYRQVVSRAIRWRW 526
            +ALTL+P L + LLK  V+ G           FN+  +R   R  SG   ++ R  R   
Sbjct: 485  VALTLSPALCATLLKP-VQAGHHEEKRGFFGWFNRTFERNAERYRSGVGGLLHRGKR--- 540

Query: 527  AAPVVIAACIGGSYGLMQL-VPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL 585
               +++ A + G  G+  + +P    P ED+G + + V+   + +  ++   M   EQ L
Sbjct: 541  --SLLVYALLVGVLGMTFMRLPTSFLPDEDQGTLMAQVKLPASATDEQLQQTMKSFEQYL 598

Query: 586  MPLLGQGFLKSFSIQSPAFGGNAGDQ-TGFVIMILEDWNDRTVTAQEALSQVRKALAGIP 644
                      + +       G +GDQ TG   + L+DW +R   AQ+A S  R+    + 
Sbjct: 599  SSQKEVSHYITLT-------GLSGDQATGNAFITLKDWRERGGKAQDAASLARRFTMDMA 651

Query: 645  ----DVRVFPFMP-GFRG-GSNE--PVQFV-LGGSDYSELKTWAEKLEEEAEKSPFMTGA 695
                +  VF  +P   RG GSN    VQ   LGG  +  L    E+    A K P ++  
Sbjct: 652  TRASNANVFVMLPPAVRGLGSNAGFDVQLQDLGGIGHEALVQAREQFLALARKDPALSQV 711

Query: 696  DIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGD 755
              +  + TP+  + ID ++AA L +S   I+DTL   +GG  V  F+  G    VY++ D
Sbjct: 712  RSNNLDDTPQFSIDIDDRKAAALNLSTSDINDTLSSAMGGSYVNDFINNGRVKKVYVQAD 771

Query: 756  ENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYT 815
                     + + ++R A  E+V             + +L+ YN   S  +  +  AG +
Sbjct: 772  APFRMQPDSVDRWHVRNANSEMVPFSAFASSRWTYGSPQLSRYNGMSSFELIGDPAAGVS 831

Query: 816  LGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESF 875
             G A+D +++  ++ LP  I   ++G S   + + S   +++A+++L  +L LAA +ES+
Sbjct: 832  SGTAMDAVERIMKQ-LPQGIGYEWAGSSYQERLSGSQAPLLYAVSILFVFLCLAALYESW 890

Query: 876  INPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR 935
              P  VML VP+GV G  L   + G   ++Y Q+G++  +G+  KN ILIVEFA QL+D 
Sbjct: 891  SVPFSVMLVVPLGVLGAVLATKLAGLSNDVYFQVGLLATVGLSAKNAILIVEFAKQLQDE 950

Query: 936  GVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATL 995
            G+   +A + A   RLRPILMT+   + G +PL +STGAG  SR A+G  +  G+  AT+
Sbjct: 951  GMALVEATLQAVRLRLRPILMTSLAFMFGVLPLALSTGAGSGSRRAIGVGVLGGIATATV 1010

Query: 996  VTLLVIPAMY 1005
            + +  +P  +
Sbjct: 1011 LGIFFVPLFF 1020