Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1026 a.a., Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  605 bits (1560), Expect = e-177
 Identities = 358/1027 (34%), Positives = 579/1027 (56%), Gaps = 27/1027 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D+ V+RPV ALV+S L+ + G  +   L VR+ P  ES  ++++T+Y GAS  +++
Sbjct: 1    MKFTDLFVRRPVLALVVSTLILLLGARALGDLPVRQYPLTESTTLTITTQYPGASPELMQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              +T  +   +A I  +D ++S S  G S I+V  +L  D N  ++     +++ +  LP
Sbjct: 61   GFVTQPIAQAVATIENVDYLSSSSTLGRSVISVRMKLNADANQALTQAMAQISQVKYRLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
             EA DP + K++G   A  Y+  SS  M    LTDY+ RV+  +F+ I+GVS V+VSGG 
Sbjct: 121  AEAFDPVILKSSGEATAVAYVGFSSKTMPMPALTDYLSRVVQPQFASITGVSGVEVSGGQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M V + P  MA RG++  +++DAL + N+++  GQV+    V ++R      +  +F
Sbjct: 181  TLAMRVWLDPNRMAARGISAGELADALRQNNVQAAPGQVKGLYVVSNIRVNTDLVNVAEF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              +VVKR  D   + L DVA V +GA + +S+   DG+  + +G+    + NPL + KR+
Sbjct: 241  RDMVVKRDGDAI-VRLGDVATVELGAASADSSATMDGVPAIYLGLQAAPNGNPLVIVKRI 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
             E +  ++Q LP G  + + ++   FIE SI EV  TL     +V++V+++ +G +RA L
Sbjct: 300  RELLPGIKQNLPPGVEVQLPFELARFIEASIDEVQKTLLEAIAIVVIVIFLCLGSVRAVL 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+S++ A      FGFSINL+TL+A++L+IGLVVDDAIVVVEN+  HIE G+  
Sbjct: 360  IPVVTIPLSMLGAAALMLLFGFSINLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSR 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            + AA  G REV   VIA TL L  V+ PI  M G+ G LF EF+  LA AV+ S +IALT
Sbjct: 420  VQAALIGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+PV+ S LL  +    R  +  +  F +L +GY +++  ++  RW   V  A  +    
Sbjct: 480  LSPVMSSFLLPQDTTGSRMARAAEAFFHKLATGYGRLLDVSLHHRWVTGVFAALVLASLP 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             L      +L P ED+ ++ + ++       +   AN+D VE+      G+ + + F+  
Sbjct: 540  FLYNSAQRELAPGEDQAMVLTAIK-------SPQHANIDYVEK-----FGKKWDEVFAAL 587

Query: 601  SPAFG-----GNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVF----PF 651
                G     G+ G       + L DW DR   A +     +  +  +    VF    P 
Sbjct: 588  PENTGRWLINGSDGVSNSIGGVQLSDWKDRKRNADQIQGDTQGRMNDVEGSSVFAFQLPS 647

Query: 652  MPGFRGGSNEPVQFVL-GGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTI 710
            +PG  GG   PVQ V+   +D+  +    E L++ A  S      D D     P + + +
Sbjct: 648  LPGSTGGL--PVQMVIRSAADHRTVFEAMEALKKSARDSGKFIVVDSDLEFNNPTVEIRV 705

Query: 711  DKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYM 770
            D+ +A  LG+++KSI DTL V++G   V  F   G  YDV  +        A  LS+ ++
Sbjct: 706  DRAKANSLGVTMKSIGDTLAVLVGENYVNRFGMDGRSYDVIPQSPREQRLTAEALSRYFV 765

Query: 771  RTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI 830
            ++A+G+ V L  + ++       +L  +N+  + T  A    G T+G A+ FL ++A++ 
Sbjct: 766  KSASGQPVPLANLVQLSTSVGPNKLTQFNQLNASTFQAIPAPGVTMGDAVAFLSEEAKK- 824

Query: 831  LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVF 890
            LP   S  +  +++ F +  S++ + F  A++V YLVLAAQ+ES  +PL+++++VPM + 
Sbjct: 825  LPAGFSYDWQSDARQFTQEGSALVMAFVFAIVVIYLVLAAQYESLRDPLIILISVPMSIC 884

Query: 891  GGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGVEFEKAIIDASAR 949
            G  + L +    +NIY+QIG++ LIG+++K+GIL+VEFAN+++ ++G++   +I +A+  
Sbjct: 885  GALVPLALGFGTINIYTQIGLVTLIGLISKHGILMVEFANEIQMNKGLDRRASIEEAARI 944

Query: 950  RLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009
            RLRPILMT    + G +PL+ ++GAG  SR ++G VI  GM   TL TL V+P MY L++
Sbjct: 945  RLRPILMTTAAMVVGLVPLLFASGAGANSRFSIGLVIVVGMLVGTLFTLFVLPTMYTLLA 1004

Query: 1010 GSTQAPG 1016
               +A G
Sbjct: 1005 RDHRAAG 1011