Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1042 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  473 bits (1216), Expect = e-137
 Identities = 330/1032 (31%), Positives = 524/1032 (50%), Gaps = 35/1032 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +++  + RPV A V+++L+ + G V+   L V + PDI  P V VS  Y GASA  +E+ 
Sbjct: 2    IANFFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVENS 61

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +T VLE QL GI G+    S S + G + I+VTF  G D +T    +++ V++A   LP+
Sbjct: 62   VTQVLEQQLKGIDGLLYFKSTSSSAGYADISVTFRQGIDPDTAQVQVQNKVSQATSRLPQ 121

Query: 122  EADDP--QVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
                    V+K+  +    V +   +     T + D++   L D  S + GV SV   G 
Sbjct: 122  AVQQQGVTVYKSQNNFLLIVALYDETDRRTDTDVADWMASNLRDPVSRVDGVGSVQAFGA 181

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLE----------SPGGQVRNDSTVMSVR 229
             Y  M + + P  +A   +  SDI+ A+  +N +          SP GQ  N +     R
Sbjct: 182  AY-AMRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSR 240

Query: 230  TARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQS 289
                 Q+ E F  +V+K  +DG  + L DVA V IG E+   T + +G       I+   
Sbjct: 241  L----QTPEQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAP 296

Query: 290  DANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVL 349
             AN L  AK V   + +++  LP G R+A   D+T F++ SI  V  TL     LV++V+
Sbjct: 297  GANALTTAKAVKARIAEMEPSLPPGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVM 356

Query: 350  YIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVEN 409
            Y+F+   RAT+IPA+TVPV L+  F     FG+SIN++TL  ++L+IGL+VDDAIVVVEN
Sbjct: 357  YLFLQNWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVEN 416

Query: 410  IFHHI-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLA 468
            +   + E G     A  K  +E+  A+I   LV+  VFLP++F  G VG+++ +FSV + 
Sbjct: 417  VERVMHEEGLDAKAATIKSMKEITGALIGIALVVSAVFLPMTFFGGSVGVIYRQFSVTII 476

Query: 469  MAVIFSSLIALTLTPVLGSKLLKANVKPGR--FNQLIDRLFARLESGYRQVVSRAIRWRW 526
             ++  S ++A+ L P L ++ LK  V P    F    +R F   +  Y  ++ R +R   
Sbjct: 477  ASMALSVVVAIVLIPALCARFLKPGVPPRTRGFLGAFNRRFDAAQGRYVGLLGRILRKPL 536

Query: 527  AAPVVIAACIGGSYGLMQL-VPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRL 585
                V AA + G  GL+ L +P    P ED+G +   V      +  R  A    VE+  
Sbjct: 537  RFTAVYAAIVAG-MGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQGRTDAVNRAVEKHF 595

Query: 586  MPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIP- 644
            +          F++   ++ G +G  TG   + L+DW++R    + A + V +A A +  
Sbjct: 596  LETEKDTTDTIFTLAGWSYAG-SGQHTGMAFVSLKDWSERKDPQKRAQAIVERASAALSK 654

Query: 645  ---DVRVFPFM-PGFRG-GSNEPVQFVL---GGSDYSELKTWAEKLEEEAEKSPFMTGAD 696
               D  V+  + P   G G +   +F L    G    +L    E L  +A K   +    
Sbjct: 655  QQRDAEVYGMVPPPIEGLGQSNGFEFWLQDTSGMGADKLVQKREALVRDANKDKRLQSVR 714

Query: 697  IDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDE 756
             +    TP+L V ID+ +A+ L +S+  ++ TL +  GG  V  F++RG    VY++ D 
Sbjct: 715  ANSIANTPQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADA 774

Query: 757  NSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTL 816
               +   D+ Q ++R +TG +              A +L  YN   +V I      G + 
Sbjct: 775  PYRSAPEDMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGTAAHGTSS 834

Query: 817  GQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFI 876
            G A+  ++  A++        ++SG S   + +     ++FA+++LV +L LAA +ES+ 
Sbjct: 835  GTAMSAVEAVARK--QTGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWS 892

Query: 877  NPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG 936
             P  VML +P+GV G  +   + G   +IY Q+G++  IG+  KN ILI+EFA     RG
Sbjct: 893  VPFSVMLVIPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRG 952

Query: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996
            V    A+ + +  RLRPILMT+   LAG +PL ++TGAG  S++A+GT +F G+  AT +
Sbjct: 953  VPLLDAVAEGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLAATAL 1012

Query: 997  TLLVIPAMYRLI 1008
             +  +P  Y L+
Sbjct: 1013 GIFFVPLFYLLV 1024