Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  535 bits (1378), Expect = e-156
 Identities = 331/1019 (32%), Positives = 548/1019 (53%), Gaps = 24/1019 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M LS   ++RPVA ++LS+ + + G VSF  L V  +P ++ PV+ VS    GAS  ++ 
Sbjct: 1    MNLSGPFIRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMA 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            S + + LE +L  I+G+  +TS S  G +R+ + FELG D++    +++ A+   +  LP
Sbjct: 61   STVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLP 120

Query: 121  EEADDPQVFKNNGSGQASVYI-NLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
                    +K     QA + + +L+S  + + QL D  + +L    + +SGV  V + G 
Sbjct: 121  SGMRSMPTYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGS 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAED 239
                + + ++P+L+    ++  ++  A++  N   P G V +      VR     +SA+D
Sbjct: 181  SLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKD 240

Query: 240  FEYLVVKRASDGTPIYLKDVADVFIGAENE-NSTFKSDGIVNVSMGIVPQSDANPLEVAK 298
            +E +V+ R  +GT + L DVA V  G EN  NS F +D    V + +  Q+ AN +E   
Sbjct: 241  YEPVVI-RQQNGTILRLSDVATVTDGVENRYNSGFFNDQAA-VLLVVNRQTGANIIETVD 298

Query: 299  RVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRA 358
            ++  ++  +Q  LP   +L +  D +  I+ ++ E   TL I   LVILV+Y+F+G LRA
Sbjct: 299  QIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRA 358

Query: 359  TLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGE 418
            +LIP++ VPVSL+  F   Y  GFS+N ++LMALIL+ GLVVDDAIVV+ENI  HIE G+
Sbjct: 359  SLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQ 418

Query: 419  KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478
             P+ AA+ G +EVGF +++  + LV VF+ I FM G+V  LF EFS+ LA A+I S +++
Sbjct: 419  PPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVS 478

Query: 479  LTLTPVLGSKLLK-ANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIG 537
            LTLTP+L ++ LK    +  R  +  D L  R+ + Y   +  A+R +    + + A IG
Sbjct: 479  LTLTPMLCARWLKPQQAEQTRLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIG 538

Query: 538  GSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSF 597
             +  L  +VP  L P +D G +  F+RG D  S+  M   M++  + L        L   
Sbjct: 539  INIALYVVVPKTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRAL--------LADP 590

Query: 598  SIQSPA--FGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMP-- 653
            ++QS A   GGN+G    FV++ L+  ++R + AQ+ + ++RK L  +P  R+F      
Sbjct: 591  AVQSVAGFIGGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQD 650

Query: 654  -----GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVV 708
                 G R  ++    + L   D + L+ W  K+       P +T  D      T ++ +
Sbjct: 651  LQLGGGGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTL 710

Query: 709  TIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQI 768
             +D+ +A  LGI +  ++  L      ++++T  +   +Y V L  +     + + L Q+
Sbjct: 711  VVDRDQAKRLGIDMDMVTAVLNNAYSQRQISTIYDSLNQYQVVLEINPKYAWDPSTLEQV 770

Query: 769  YMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQ 828
             + TA G  V L T+   +   +  R++H  +  S  I  ++  GY+  QA+  L++   
Sbjct: 771  QVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERAVA 830

Query: 829  EI-LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPM 887
            ++ LP ++     G +  F + Q     +   ALL+ YLVL   +ES+I+PL ++ T+P 
Sbjct: 831  KLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTLPS 890

Query: 888  GVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDA 946
               G  L L+V G   ++ S +G+ +LIG+V KN IL+++ A QL R +G   E++I  A
Sbjct: 891  AGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIRRA 950

Query: 947  SARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005
               RLRPILMT    + G++PL++S   G E R  +G  I  G+ F+ ++TL   P +Y
Sbjct: 951  CLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVVY 1009