Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1027 a.a., Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  600 bits (1547), Expect = e-175
 Identities = 365/1037 (35%), Positives = 580/1037 (55%), Gaps = 32/1037 (3%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +DV V+RPV ALV+S L+ + G+ +  KL +R+ P +ES  +++ST Y GASA +++
Sbjct: 1    MRFTDVFVRRPVLALVVSSLIILMGLFAMGKLPIRQYPLLESSTITISTEYPGASAELMQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              +T  +   ++ + GID ++S S+ G S IT+   L  D    +++    V + +  LP
Sbjct: 61   GFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMAKVNQVRYRLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            E+A DP V  + G   A  Y+  +S  +   +L+DY+ RV+  +FS I GV+ V   GG 
Sbjct: 121  EKAYDPVVELSAGDSTAVAYVGFASDSLSIPELSDYLSRVVEPQFSGIDGVAKVQSFGGQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + +  E MAGRGV  +D++ A+   N ++  GQVR    +  ++        EDF
Sbjct: 181  RLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADIQVDTDLTRVEDF 240

Query: 241  EYLVVKRASDGTPIY-LKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKR 299
              L+++  +DGT +  L+D+  V + A    ++   DG   V +G+ P    NPL + + 
Sbjct: 241  RELIIR--NDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVHLGLFPTPSGNPLVIVEG 298

Query: 300  VHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRAT 359
            + + + ++QQ LP G  +A+ Y++  FI+ SI EV  TL     +V+LV+++ +G LR+ 
Sbjct: 299  IRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAMLIVVLVIWLCLGSLRSV 358

Query: 360  LIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEK 419
            LI  V +P+S++ A      FGFS+NL+TL+A++L+IGLVVDDAIVVVEN+  HIE G+ 
Sbjct: 359  LIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKS 418

Query: 420  PLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIAL 479
            P+ AA  G RE+   VIA TL L  V+ PI  M G+ G LF EF++ LA AVI S ++AL
Sbjct: 419  PIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTLFREFALTLAGAVIVSGIVAL 478

Query: 480  TLTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRW-AAPVVIAACIGG 538
            TL+PV+ S LL+   + G    + DRLF  L   Y +V++  +  RW +  V +  C+  
Sbjct: 479  TLSPVMSSLLLQPGQQHGAMAAIADRLFGTLSGVYGRVLAYTLAHRWISGGVALLVCLSL 538

Query: 539  SYGLMQLVPAQLTPSEDRGVIFSFVRGADATSY---NRMAANMDLVEQRLMPLLGQGFLK 595
             + L  L   +L P ED+  + + ++     S     R A  +D V + +        + 
Sbjct: 539  PW-LYLLPQRELAPPEDQAAVLTAIKSPQHASLEYAERFALKLDQVMKSIAETTDTWIIN 597

Query: 596  SFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF---- 651
                 + +FGG          + L  W  R  +A +  +Q+++A+A I    +F F    
Sbjct: 598  GTDGPAASFGG----------INLSAWQARERSAAQVQAQLQQAVADIEGSSIFAFQVAS 647

Query: 652  MPGFRGGSNEPVQFVL-GGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTI 710
            +PG  GG   PVQ VL    DY EL    E L++ A  S      D D     P + V +
Sbjct: 648  LPGSSGGL--PVQMVLRSAQDYPELFQTMEVLKQRARDSGLFAVVDSDLDYNNPVVKVRV 705

Query: 711  DKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYM 770
            D+ +AA LGIS+++I ++L V++G + +  F   G  YDV  +  ++     A LS+ Y+
Sbjct: 706  DRAKAASLGISMQAIGESLGVLVGEQYLNRFALFGRSYDVIPQSIQDQRLTPAALSRQYV 765

Query: 771  RTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI 830
            R   G LV L T+ R+D   +  RL  +++Q + T+ A    G ++G A+ FL+Q   E 
Sbjct: 766  RAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE- 824

Query: 831  LPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVF 890
            LP   S  +  ES+ + +   ++   F  AL+V YLVLAAQ+ES ++PL++++TVP+ + 
Sbjct: 825  LPPGFSHDWQSESRQYVQEGFALMWAFLAALVVIYLVLAAQYESLVDPLIILVTVPLSIC 884

Query: 891  GGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GVEFEKAIIDASAR 949
            G  L L +    +NIY+QIG++ LIG+++K+GIL+V FAN+++ R  ++   AI+ A+  
Sbjct: 885  GALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANEIQVRDNLDRAAAIVRAAQI 944

Query: 950  RLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS 1009
            RLRP+LMT      G +PL+ ++GAG  SR  +G VI  GM   TL TL V+P +Y  ++
Sbjct: 945  RLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPTIYAWLA 1004

Query: 1010 -----GSTQAPGHVEAE 1021
                  + +A   VEAE
Sbjct: 1005 RDHRVSTARARQLVEAE 1021