Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score =  469 bits (1206), Expect = e-136
 Identities = 311/1031 (30%), Positives = 533/1031 (51%), Gaps = 28/1031 (2%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+++++ + G +S  KL + + P I  P ++++  Y GASA  ++  
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +  V+E QL GI  +  ++S S + G   IT TFE G + +T    +++ +  A   LP+
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +          + I L S +  M +  L +YI   + D  S  +GV    V G 
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVR---TARG--- 233
             Y  M + + P  +    +   D+  A+  +N++   GQ+     +   +   T  G   
Sbjct: 181  QY-AMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTR 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+AE FE +++K   DG+ + L DVA V +G EN   + + +G     + +   + AN 
Sbjct: 240  LQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANA 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            L+ AK + E +  ++ F P G +    YD+T  +  SIS V  TL     LV LV+Y+F+
Sbjct: 300  LDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RAT+I  +TVPV L+  F      GFSIN +T+ A++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  P  A  +   ++  A++   LVL  V LP++F  G  G+++ +FS+ +  A+ 
Sbjct: 420  MSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMG 479

Query: 473  FSSLIALTLTPVLGSKLLKANVK------PGRFNQLIDRLFARLESGYRQVVSRAIRWRW 526
             S L+AL  TP L + +LK   K       G F    +R F R  +GY + V   +R + 
Sbjct: 480  LSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKV 539

Query: 527  AAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLM 586
               +  A  + G   L   +P    P ED+GV+F+ V+    +S  R    +D + + L+
Sbjct: 540  PFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLL 599

Query: 587  PLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTV-TAQEALSQ-VRKALAGIP 644
                      F++    F G  G  +G   ++L+ W++R+   +  AL+Q  ++      
Sbjct: 600  KDEADTVSSVFTVNGFNFAGR-GQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFFTFR 658

Query: 645  DVRVFPFMP------GFRGGSNEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADID 698
            D  VF F P      G   G +  +Q   GG  + +L     +   +A +S  ++    +
Sbjct: 659  DAMVFAFAPPAVLELGNATGFDVFLQD-RGGVGHEKLMEARNQFLAKAAQSKILSAVRPN 717

Query: 699  YSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENS 758
                 P+  +TID +RA+ LG+++  I++TL + LG   V  F++RG    VY++G+ ++
Sbjct: 718  GLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSA 777

Query: 759  FNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQ 818
              +  DL + Y+R   GE+V   +  + +    + +L+ YN  +++ I      GY+ G+
Sbjct: 778  RMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGE 837

Query: 819  ALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINP 878
            A+  +++ A E LP+ I  S++G S + K + S +  +FAL++L  +L LAA +ES+  P
Sbjct: 838  AMAEVERIAGE-LPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIP 896

Query: 879  LVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVE 938
            + V+L VP+G+ G  +   + G   ++Y  +G++  IG+  KN ILIVEFA +L ++G  
Sbjct: 897  IAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRS 956

Query: 939  FEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTL 998
               A I+A   RLRPI+MT+   + G +PL +++GAG  S+ A+GT +  GM  AT++ +
Sbjct: 957  LYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAI 1016

Query: 999  LVIPAMYRLIS 1009
              +P  +  +S
Sbjct: 1017 FWVPLFFVAVS 1027