Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  628 bits (1619), Expect = 0.0
 Identities = 369/1024 (36%), Positives = 595/1024 (58%), Gaps = 22/1024 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M  +D  ++RPV A V+S+L+ + G  ++ KL +R+ P +E+ +++V+T Y GA+A  I+
Sbjct: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
              IT  L+  LA   GID +TSVSR   S I++   +G D +   +++       +  LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++++DP + K      A +Y++  S EM   Q+TDY+ RV+  + + + G++  ++ G  
Sbjct: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P  +AG G++ +D+++A+ + N  S  G+V+ +  V SV  +   +SAE F
Sbjct: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              L +K + D   + L DVA V +GAEN ++    DG  +V +GI     ANPL+V K V
Sbjct: 241  AALPLKTSGDSR-VLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEV 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
               + +++  LP    ++I YD+T FI+ SI EV  TL     +VI+V+++F+G LR+ L
Sbjct: 300  RRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVL 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP VT+P+S+I         G+S+NL+TL+A++L+IGLVVDDAIVVVENI  H+E G+ P
Sbjct: 360  IPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
              AA +G RE+   V++ T+ L  V+ PI F+ G+ G LF EF++ LA AVI S ++ALT
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ + LL+    P      +D+LF RL+  Y++++   +  R    V     +    
Sbjct: 480  LSPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCLIP 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE---QRLMPLLGQGFLKSF 597
             L++    +L P+ED+GVIF         S +   AN+D +     +  PL  + F + +
Sbjct: 540  VLLKFTQNELAPNEDQGVIFMM-------SSSPQPANLDYLNAYTDQFTPLF-KAFPEYY 591

Query: 598  SIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFR 656
            S  S    G  G QTG    +L+ WN+R  T  E L  V+  L  I  +++F F +P   
Sbjct: 592  S--SFQINGFNGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLP 649

Query: 657  G-GSNEPVQFVLG-GSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQR 714
            G G   P QFV+    DY  L   A++++  A++S      DID +   PE+VV ID+ +
Sbjct: 650  GTGEGLPFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVVDIDRAK 709

Query: 715  AAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTAT 774
            AA++G+S+ ++  TL  +LG  ++  F   G  Y V  + +    +N   L+  Y++   
Sbjct: 710  AAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNYYVKNDQ 769

Query: 775  GELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPND 834
            G+L+ L T+  + + A   +L  + +  +  I        +LG+AL  +   A+E  P  
Sbjct: 770  GQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQG--VPMVSLGEALKTVQDIAREEAPEG 827

Query: 835  ISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFL 894
             +  Y+G ++ + +  S++ + F LAL + +LVLAAQFESF +PLV+++TVP+ + G  L
Sbjct: 828  FAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALL 887

Query: 895  GLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRD-RGVEFEKAIIDASARRLRP 953
             LF+    MNIY+Q+G++ LIG+++K+GILIVEFANQLRD RG+   +AI +A+A RLRP
Sbjct: 888  PLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIEEAAAIRLRP 947

Query: 954  ILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS--GS 1011
            +LMT    + G +PLI+++GAG  SR  +G VI  GM   TL TL V+P +Y L++   S
Sbjct: 948  VLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAHKAS 1007

Query: 1012 TQAP 1015
             +AP
Sbjct: 1008 AKAP 1011