Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1045 a.a., efflux RND transporter permease subunit from Pseudomonas segetis P6

 Score =  481 bits (1237), Expect = e-139
 Identities = 314/1035 (30%), Positives = 528/1035 (51%), Gaps = 36/1035 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +S   + RP+ A V+++++ + G ++   L + + P+I +P + +   Y GASA  ++  
Sbjct: 1    MSRFFIDRPIFAWVIALMIMLVGSLAILNLPINQYPNIAAPAIGIRVNYPGASAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +  V+E QL G+  +  I+S S + G   ITVTF+ G D +T    +++ +  A   LP+
Sbjct: 61   VAQVIEQQLNGLDNLRYISSESNSDGTMTITVTFDQGTDADTAQVQVQNKLQLATPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +          + + + S++  MDR  L DYI   + D      GV    + G 
Sbjct: 121  EVQQQGIRVTKAVRNFLMIVGVVSTDGSMDRDDLADYIVSNIQDPLLRAKGVGDFQIFGA 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLE----------SPGGQVRNDSTVMSVR 229
             Y  M + + PE +    +   D+  A+  +N++          +  GQ  N + +   R
Sbjct: 181  QY-AMRIWLNPEKLNNYQLTPVDVKTAIQAQNVQISSGQFGQLPAQSGQQLNATIIGKTR 239

Query: 230  TARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQS 289
                 Q+ E FE +++K  +DG+ + L D+A V +G EN +++ + +G     M I   +
Sbjct: 240  L----QTPEQFENILIKVNADGSQVRLGDIAKVELGGENYSTSAEYNGKQAAGMAIKLAT 295

Query: 290  DANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVL 349
            DAN LE +  +   ++ ++ F PKG  +    D+T  I  SI EV  TL     LV  V+
Sbjct: 296  DANALETSAAIRSTLEDLKPFFPKGLEIVYPNDTTPVIAGSIKEVIFTLMEAIVLVFCVM 355

Query: 350  YIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVEN 409
            Y+F+   RATLIP + VPV L+  F     FGFSIN +T+  ++L+IGL+VDDAIVVVEN
Sbjct: 356  YLFLQNFRATLIPTLAVPVVLLGTFAVLDAFGFSINTLTMFGMVLAIGLLVDDAIVVVEN 415

Query: 410  IFHHI-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLA 468
            +   + E    PL A  K   ++  A++   LVL  VFLP++F  G  G+++ +FS+ + 
Sbjct: 416  VERVMAEEKLSPLEATRKSMGQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIV 475

Query: 469  MAVIFSSLIALTLTPVLGSKLLKANVKPGR------FNQLIDRLFARLESGYRQVVSRAI 522
             A+  S L+AL  TP L + LLK  +K G+      F    +  F R  SGY + V   +
Sbjct: 476  AAMSLSVLVALIFTPALCATLLKP-IKDGQVHSKRGFFGWFNNTFERGVSGYERSVGSIL 534

Query: 523  RWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE 582
            R +    ++ A  +     +   +P+   P ED+G  +  V+    +S  R    +D V 
Sbjct: 535  RHKLPYLILYALILCIIAWMFSRIPSAFLPEEDQGSFYVQVQTPAGSSMARTKDVVDQVR 594

Query: 583  QRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALA- 641
              L+   G      FSI    F G  G  +G   + L+ W +R        S V +A A 
Sbjct: 595  DYLLDEEGDIVESVFSISGFNFAGR-GQSSGMAFVTLKPWEERPGEVNSVFSLVTRAQAR 653

Query: 642  --GIPDVRVFPFMPGF---RGGSNEPVQFVL--GGSDYSELKTWAEKLEEEAEKSPFMTG 694
               I D  VF F P      G S+    F+    G  +  +    ++L   A ++P +TG
Sbjct: 654  FRSITDALVFAFAPPSIRELGNSSGFDMFLQDRAGVGHEVMTEARDQLLRMARENPALTG 713

Query: 695  ADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRG 754
               +  +  P+  + ID +RA  LG+S+  I++TL +  G   V  F+++G    VYL+G
Sbjct: 714  VRANGLKDEPQYQLEIDDERARALGLSLNDINNTLSIAWGSSYVNDFIDKGRVKKVYLQG 773

Query: 755  DENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY 814
            +  +  +  DL++ Y+R + G++V          V+ + +L  YN   ++ +      GY
Sbjct: 774  EAAARMSPEDLNKWYVRNSDGKMVPFSAFAGGKWVSGSPKLQRYNGVSAMEVLGAPAEGY 833

Query: 815  TLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFES 874
            + G A+  +++ A + LP  +  S++G S + + + S    ++AL+++  +L LAA +ES
Sbjct: 834  STGDAMQAMEEMAAQ-LPVGVGYSWTGISYEERLSGSQAPALYALSMIFVFLCLAALYES 892

Query: 875  FINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRD 934
            +  PL V+L VP+G+ G  L   + G   +++ Q+G++  IG+V KN ILI+EFA +L D
Sbjct: 893  WTIPLAVLLVVPLGIVGALLATSMRGLSNDVFFQVGLLTTIGLVAKNAILIIEFAKELND 952

Query: 935  RGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFAT 994
            +G    +A + A   RLRPI+MT+   + G +PL +S+GAG  S+ A+GT +  GM  AT
Sbjct: 953  QGKGLVEATLQACRMRLRPIIMTSLAFILGVVPLAISSGAGAGSQHAIGTGVIGGMLSAT 1012

Query: 995  LVTLLVIPAMYRLIS 1009
            L+ +  +P  + L+S
Sbjct: 1013 LLAIFWVPLFFVLVS 1027