Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1028 a.a., RND multidrug efflux transporter; Acriflavin resistance protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  746 bits (1925), Expect = 0.0
 Identities = 408/1036 (39%), Positives = 633/1036 (61%), Gaps = 25/1036 (2%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M L ++S++RPV A VLS+L+ + G+VSF  L VRE P I+ P V+VSTR+ GAS+ +IE
Sbjct: 1    MQLPEISIRRPVFASVLSLLILLVGIVSFNGLTVREYPKIDEPTVTVSTRFGGASSEVIE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            SQ+T  LED LAGI G+D ITS+SR   S+ITV F+L  D ++  +D+RD V+R ++ LP
Sbjct: 61   SQVTKPLEDSLAGIEGLDVITSISRQEQSQITVRFKLERDPDSAAADVRDKVSRVRQRLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++ D+P + K        +++ L+S      QL+D+  R+         G + V V G  
Sbjct: 121  QDVDEPVIAKVEADASPVIWLALTSDTHSALQLSDFANRLAKPVLQTAPGAAEVRVYGER 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M + + P+ +A   +   D+ DAL + NLE P G++ +     +V  A   Q+   F
Sbjct: 181  RYSMRIWMDPDRLAAYALTVQDVEDALRRSNLEVPAGRIESTLREFNVTAATDLQTPAQF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              + + R  +G  I + DVA V    ++E ++ + +G   VS+G++ Q+ ANPLE++  V
Sbjct: 241  AAVAI-RTINGQTIRIGDVARVVQAPQDERTSVRLNGRDAVSLGVIRQATANPLELSAAV 299

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
             + ++KV+Q LP G  + +  D++VFI+RSI  VY+T+     LV LV+++F+  LRA++
Sbjct: 300  RQMLEKVKQDLPAGVNVDVANDNSVFIDRSIKAVYTTIAEAVVLVALVIFVFLRTLRASI 359

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IP +T+PVSLI AF     FGFSIN +TL+AL+L+IGLVVDDAIV++ENI+ HIE G KP
Sbjct: 360  IPLMTIPVSLIGAFALMAMFGFSINTLTLLALVLAIGLVVDDAIVMLENIYRHIEEGMKP 419

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
              AA +G RE+GFA++A TL L  V+ P++F  G  G LF EF++ LA AV+ S  +ALT
Sbjct: 420  FDAAIQGAREIGFAIVAMTLTLAAVYAPLAFTPGRTGRLFAEFALALAGAVVVSGFVALT 479

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P+L SKLL+ N  PGRF++ ++R+   +  G+ + +  ++R RW    V+A     S 
Sbjct: 480  LSPMLCSKLLRHNPNPGRFDRGMERVLNAVTRGFSRALGASLRVRWLVVAVMAGSALASA 539

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             ++Q +  +L P EDRGVI + + G D  +        + +E      + Q + +   I 
Sbjct: 540  WMLQTMRQELAPIEDRGVILANINGPDGATLAYTRKYAEAIEN-----IAQDYPEFDRIF 594

Query: 601  SPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFMP-----GF 655
                 GN     G V M    W +R  + Q    ++   LA +P +  FP  P     GF
Sbjct: 595  VNV--GNPSVAQGVVFMRALPWEERERSTQRIAREITPRLASLPGISAFPITPPSLGQGF 652

Query: 656  RGGSNEPVQFVLGGSD-YSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQR 714
            R     P+ +V+  SD Y  L     + ++E  K+P +   D D     PE+ + +D++R
Sbjct: 653  R---ERPINYVIVTSDSYENLAQTVRRFQDELSKNPGLVQIDTDLRLNKPEIRMDVDRER 709

Query: 715  AAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTAT 774
            AA++G++V +I+ T+E MLGG+ VT +   GE+YDV ++    + +   D+ ++++R   
Sbjct: 710  AADMGVNVDAIARTVETMLGGRIVTRYKRDGEQYDVVVQTVSGNRSTPEDIDRLFVRGRN 769

Query: 775  GELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPND 834
              ++ L ++ +I EV     L H+ +++S ++TANL   Y LG+AL F+D+ A+E+LP  
Sbjct: 770  DAMIPLASLVKISEVVVPRELNHFGQRRSASLTANLAPDYALGEALQFMDKTAREVLPAG 829

Query: 835  ISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFL 894
             +   +G+S++F+    S+AIVFAL+LL  YLVLAAQFESF++P ++ML+VP+ + G  L
Sbjct: 830  YTTDLNGQSREFRNASGSLAIVFALSLLFIYLVLAAQFESFVDPFIIMLSVPLSMMGALL 889

Query: 895  GLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPI 954
             L + G  +N++SQIG+I L+G++TK+GILIVEFANQLRD+G+E  +A+  ++A RLRPI
Sbjct: 890  ALKLTGGTINVFSQIGLITLVGLITKHGILIVEFANQLRDQGLEKFEAVRQSAALRLRPI 949

Query: 955  LMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLIS----- 1009
            LMT    + G+IPL +++GAG ESR  +G VI  GM   TL+T+ V+P MY L+S     
Sbjct: 950  LMTTGAMVLGAIPLALASGAGAESRQQIGWVIVGGMSVGTLLTIFVVPTMYTLLSRDKSH 1009

Query: 1010 ---GSTQAPGHVEAEL 1022
                + Q  GH EA +
Sbjct: 1010 SKAKAAQHGGHPEAAI 1025