Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  496 bits (1276), Expect = e-144
 Identities = 313/1033 (30%), Positives = 528/1033 (51%), Gaps = 34/1033 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +++  + RP+ A VL++LLC+ G ++   L V + PD+  P V ++  Y GASA  +E+ 
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVRITANYPGASAQTLENT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +T V+E  + G+  +  ++S S   G + IT++F  G D +  V  +++ +  A R LP+
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 122  EADDPQVF--KNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
               D  V   K   +   ++    +   MD+  + DY+   + D  S ++GV  +D  G 
Sbjct: 121  AVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + + P  +    + T D++DA+  +N +   GQ+    +V       ++     
Sbjct: 181  QYS-MRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSL 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+ + F  + ++   DG+ + L DVA V +GAE  +   + +G     +G+   S AN 
Sbjct: 240  LQTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANE 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            +  AK V + ++++ Q+ P G    I Y++T F++ SI +V  TL     LV LV+Y+F+
Sbjct: 300  MATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RATLIP + VPV L+  F   Y FG+SIN +T+ A++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERI 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  P  A  K   ++  A++   +VL  VF+P++F  G  G ++ +FS+ +  A++
Sbjct: 420  MSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMV 479

Query: 473  FSSLIALTLTPVLGSKLLKANVKP---------GRFNQLIDRLFARLESGYRQVVSRAIR 523
             S L+A+ LTP L + LLK   K          G FN+  +R   R E G  +++ R++R
Sbjct: 480  LSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWFNRTFNRNAERYEKGVAKILHRSLR 539

Query: 524  WRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQ 583
            W     ++    +GG   L   +P    P EDRG+  + ++    ++  +    ++ VE 
Sbjct: 540  W----ILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSIQLPSGSTQQQTLKVVEKVEN 595

Query: 584  RLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEA---LSQVRKAL 640
                      +  FS      GGN G     + + L+DW+ R  T   +   + +  KA 
Sbjct: 596  YYFTHEKDNIMSVFSTVGSGPGGN-GQNVARMFVRLKDWDARDPTTGSSFAIIERATKAF 654

Query: 641  AGIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFMTGA 695
              I + RVF   P    G      F +      G+ +  L    ++L E A K+  +T  
Sbjct: 655  NQIKEARVFASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARDQLIELAGKNSSLTRV 714

Query: 696  DIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGD 755
              +  + +P+L + ID+++A  LG+S+  I+DTL+   G   V  F++RG    VY++  
Sbjct: 715  RHNGLDDSPQLQIDIDQRKAQALGVSIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAA 774

Query: 756  ENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYT 815
                    D++  Y+R   G +V             + RL  YN   +V I      G +
Sbjct: 775  AKYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVS 834

Query: 816  LGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESF 875
             G A+D ++    + LP    + ++  S   + + +    ++A++LLV +L LAA +ES+
Sbjct: 835  TGTAMDVMESLVHQ-LPGGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESW 893

Query: 876  INPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR 935
              P  VML VP+GV G  L  ++ G   ++Y Q+G++ +IG+  KN ILIVEFAN++  +
Sbjct: 894  SVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQK 953

Query: 936  GVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATL 995
            G     A + AS +RLRPILMT+   + G +P+  STGAG  S+ AVGT +  GM  AT+
Sbjct: 954  GHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATV 1013

Query: 996  VTLLVIPAMYRLI 1008
            + +  +P  + LI
Sbjct: 1014 LAIFFVPLFFVLI 1026