Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1052 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Kangiella aquimarina DSM 16071

 Score =  476 bits (1224), Expect = e-138
 Identities = 307/1036 (29%), Positives = 542/1036 (52%), Gaps = 47/1036 (4%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RP+ A V+++L+ + G ++  +L V   PDI  P +SV+  Y GASA +IE  +T+++
Sbjct: 6    INRPIFAWVIALLILLGGTLAIQQLPVMSYPDISPPQISVTASYPGASAQVIEDTVTTII 65

Query: 68   EDQLAGISGIDEITSVS-RNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDP 126
            E+++ GI G+  I S S R G   I +TF+ G D++    ++++ + R +  LP      
Sbjct: 66   EEEMNGIEGLKYIRSESSRTGTGTINLTFDTGTDIDIAGVEVQNRLKRVEARLPSSVRTQ 125

Query: 127  QVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVM 184
             V  +       + ++L S     + T L DY++R +L     I GV S    G  Y  M
Sbjct: 126  GVAVDKARRDFLMVVSLYSPNGTFNSTDLGDYLDRAILSDIRRIDGVGSAQQFGSRY-AM 184

Query: 185  YVRIKPELMAGRGVATSDISDALNKEN----------LESPGGQVRNDSTVMSVRTARGY 234
             V + P+ MA  G+  ++++ A++ +N          L SPG Q  N + ++  + +   
Sbjct: 185  RVWLDPKQMAAYGITPAEVNAAVSSQNAQLATGELGSLPSPGNQQINATVLVPAQLS--- 241

Query: 235  QSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPL 294
             + E+F  ++++ +S G  + LKDVA +  GA +  S     G    +  I   +  N L
Sbjct: 242  -TVEEFGDIILRSSSQGAVVRLKDVATIERGANSYGSQAFLSGQDAAAFAIKLSNTGNAL 300

Query: 295  EVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIG 354
            + A+ V  ++++++QF P      + +D+++F++ SISEV  TL     LV +V+++F+ 
Sbjct: 301  DTAEAVKAKMEELEQFFPDDMAWVVPFDASIFVDESISEVVKTLLEAVVLVTVVMFLFLQ 360

Query: 355  QLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI 414
              RATLIP + VP+SLI A +    FGFSIN++T+ A++L+IG+VVDDAI+VVEN+   +
Sbjct: 361  SWRATLIPLIVVPISLIGAGIGLQLFGFSINMLTMFAMVLAIGIVVDDAIIVVENVKRVM 420

Query: 415  -ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIF 473
             E G KP  A  K  +++  A+I TT VL+ VF+P++F  G VG ++ +FS+ + ++V  
Sbjct: 421  DEEGLKPYPATKKAMKQISGAIIGTTAVLIAVFIPMAFFSGSVGRIYQQFSLTIVISVAI 480

Query: 474  SSLIALTLTPVLGSKLLKANVKPGRFNQL---------IDRLFARLESGYRQVVSRAIRW 524
            S+ ++L+L+P +   LLK   +    N+           +R F   ++ Y   V +    
Sbjct: 481  SAFLSLSLSPAIAQGLLKLEKRDAEGNKAKKEMAFFRWFNRGFESFKNFYMNSVQKMFSK 540

Query: 525  RWAAPVVIAACIGGSYGLMQLV--PAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE 582
            +     +    +   Y + + +  P    PSED+G I S        +  R    ++L E
Sbjct: 541  KGMLITMSVFVLLCGYVVARFIYMPTAFVPSEDQGFIVSTTLLPPGATRER---TLELTE 597

Query: 583  QRLMPLLGQG-FLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVT------AQEALSQ 635
            +     L Q   ++  ++   +F G+ G  T    +  + W++R         A  A ++
Sbjct: 598  KTDAWYLEQPEVVRVITVAGFSFFGS-GQNTAITFVNFKPWSEREGMRNADEFAAAASAE 656

Query: 636  VRKALAGIPDVRVFPFMPGFRGGSNEPVQFV---LGGSDYSELKTWAEKLEEEAEKSPFM 692
             +K   G       P +PG    S    Q      GG D   L   A ++  +A+++   
Sbjct: 657  FQKFSEGNTFAFNMPPIPGLGNSSGFDFQLQNRGTGGQD--ALFAAAFQIIGKAQQTGKF 714

Query: 693  TGADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYL 752
                 D     P L + +D+ +A  +GI + +++ TL++ LG   V  +++ G+   V++
Sbjct: 715  AEVRPDTLPAAPMLTLEVDRVKARAMGIDIPTLNSTLQIALGSSYVNDYIDNGKVRQVWV 774

Query: 753  RGDENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEA 812
            + D  + +   ++  + +R   G+LV L  +       +  +L  YN   S+ +T +   
Sbjct: 775  QADAQTRSTTEEIMSLQIRNQQGDLVNLSEIATASWGEAPAKLTRYNGLPSLPLTGSGAE 834

Query: 813  GYTLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQF 872
            G + G  +D ++Q A E LP  I+  +SG+S + K   +  A++FAL+ LV +LVLAA +
Sbjct: 835  GVSSGVVMDLMEQFAAE-LPPGIAYEWSGQSLEEKVAGNQTALLFALSFLVVFLVLAALY 893

Query: 873  ESFINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL 932
            ES+  P+ V+L VP+G+ G  +G+ + G   +IY ++G+I +IG+  KN ILIVEFA + 
Sbjct: 894  ESWSVPMAVVLMVPLGILGCIIGMDIRGMPNDIYFKVGLITIIGLSAKNAILIVEFAREA 953

Query: 933  RDRGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGF 992
            +  G    +A+I+A   RLRPILMT+   + G +P+ +++GAG  SR A+GT +  GM  
Sbjct: 954  QSDGKSPLEAVIEACKIRLRPILMTSLAFIMGVLPMALASGAGSASRQAIGTGVVSGMFA 1013

Query: 993  ATLVTLLVIPAMYRLI 1008
            A + ++  +P  Y L+
Sbjct: 1014 AAVFSIFFVPVFYLLV 1029