Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1041 a.a., MdtB/MuxB family multidrug efflux RND transporter permease subunit from Erwinia tracheiphila SCR3

 Score =  504 bits (1298), Expect = e-146
 Identities = 298/1016 (29%), Positives = 547/1016 (53%), Gaps = 13/1016 (1%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RPVA  +L + + + G++++  L V  +P+++ P + V T Y GAS  ++ S +T+ L
Sbjct: 19   ILRPVATTLLMVAILLAGILAWRVLPVSALPEVDYPTIQVVTLYPGASPDVVTSSVTAPL 78

Query: 68   EDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDPQ 127
            E Q   +SG+ +++S S  G S IT+ F+L   L+    +++ A+  A   LP +  +P 
Sbjct: 79   ERQFGQMSGLKQMSSQSTGGASVITLQFQLSLKLDVAGQEVQAAINAATNLLPADLPNPP 138

Query: 128  VF-KNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVMYV 186
            V+ K N +    + + ++++ M  TQ+ D +E  +  + S + GV  V +SGG    + V
Sbjct: 139  VYSKVNPADPPIMTLAVTTTSMPLTQVQDMVETRIAQKISQVPGVGLVTLSGGQRPAVRV 198

Query: 187  RIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFEYLVVK 246
            ++  + +A RG+ +  +   +   N+ S  G +      +++      +SAED+  L+V 
Sbjct: 199  KLNAQALAARGLDSETVRSVIGSANVNSAKGSLDGPERSVTLSANDQMKSAEDYRLLIVS 258

Query: 247  RASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDK 306
               +G+P+ L+D+A +  GAEN      ++    + + +  Q  AN +  A  +   +  
Sbjct: 259  Y-QNGSPVRLRDIATIEQGAENRWLGAWANQRPAIVLNVQRQPGANIITTADSIRAMLPG 317

Query: 307  VQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATLIPAVTV 366
            +   LP    + +  D T  I  S+ +V   L +   LV++++Y+F+  + ATLIPA+ V
Sbjct: 318  LVATLPASVDMQVLTDRTTNIRASVKDVQIELVLAIALVVMIIYLFLRNIAATLIPAIAV 377

Query: 367  PVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKPLLAAYK 426
            P+SLI  F   Y+ G+SIN +TLMALI++ G VVDDAIVV+ENI  +IE+G+KPL AA K
Sbjct: 378  PLSLIGTFAVIYFLGYSINNLTLMALIVATGFVVDDAIVVIENISRYIEKGDKPLDAALK 437

Query: 427  GTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLG 486
            G+ E+GF +I+ T  L+ V +P+ FM  +VG LF EF++ LA++++ S++++LTLTP++ 
Sbjct: 438  GSGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAITLAVSILISAVVSLTLTPMMC 497

Query: 487  SKLLKANV--KPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSYGLMQ 544
            +++L A+   K  RF++  + LF R+ + Y +++++ +   W    V  A +  +  L  
Sbjct: 498  ARMLNADSLRKQNRFSRASEALFDRVIAAYGRILTKVLNHPWLTLSVALATLALTVLLWV 557

Query: 545  LVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQSPAF 604
            ++P    P +D G+I   ++   + SY  MA     V  R   ++    ++S +      
Sbjct: 558  IIPKGFFPVQDNGIIQGTLQAPQSVSYENMAQRQQQVAAR---IIKDPAVESLTAFIGVD 614

Query: 605  GGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVF----PFMPGFRGGSN 660
            G N+   +G + + L+  ++R    Q+ + +++  +A +P V ++      +      S 
Sbjct: 615  GTNSALNSGRLQINLKPLSERDDRIQQVIKRLQHEVAQLPGVDLYLQPIQDLTIDTTVSR 674

Query: 661  EPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAELGI 720
               QF L  +    L  W  +L  +    P +     D+  +  E  + +D+  A+ LGI
Sbjct: 675  TQYQFTLQANTLDALSLWVPQLMAKLSALPQLQDISSDWQNRGLEAFIRVDRDSASRLGI 734

Query: 721  SVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATGELVTL 780
             +  + + L    G + ++T   +  +Y V L  D  S    A L  I+++++ G +V L
Sbjct: 735  GMADVDNALYNAFGQRLISTIYTQSSQYRVVLEHDTRSTPGLAALDAIHLKSSNGTVVPL 794

Query: 781  DTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI-LPNDISVSY 839
              + R ++    + + H ++  S T + N+  GY+L QA++ + +  QE+ +P +I   +
Sbjct: 795  SALARPEQRYGPLGINHLDQFPSTTFSFNVSNGYSLEQAVNAISKARQELAMPAEIMTQF 854

Query: 840  SGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLFVM 899
             G +  F+   SS   +   A++V Y+VL   +ESFI+P+ ++ T+P    G  L L + 
Sbjct: 855  QGSTLAFQAALSSTVWLIIAAIVVMYIVLGVLYESFIHPITILSTLPTAGVGALLALMLC 914

Query: 900  GQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDASARRLRPILMTA 958
            G  +++ + IG+I+LIG+V KN I++++FA    R+RG+   +AI  A   R RPILMT 
Sbjct: 915  GNELDVIAIIGIILLIGIVKKNAIMMIDFALAAERERGMAPYEAIYQACLLRFRPILMTT 974

Query: 959  FTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQA 1014
               L G++PL++S+G G E R  +G  +  G+  + ++TL   P +Y L     +A
Sbjct: 975  LAALFGALPLMLSSGQGAELRQPLGIAMVGGLIASQVLTLFTTPVIYLLFDQLARA 1030