Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1036 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Enterobacter asburiae PDN3

 Score =  488 bits (1256), Expect = e-142
 Identities = 323/1023 (31%), Positives = 531/1023 (51%), Gaps = 28/1023 (2%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            V+RPV A V+++L+ + G+++   L V + PD+  P + +S  Y GASA  +E+ +T V+
Sbjct: 7    VRRPVFAWVIAILIMLAGMLAIRTLPVAQYPDVAPPSIKISATYTGASAQTLENSVTQVI 66

Query: 68   EDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADDP 126
            E QL G+  +   TS S + G   ITVTFE G D +T    +++ V +A+  LP E    
Sbjct: 67   EQQLTGLDNLLYFTSTSSSDGSVSITVTFEQGTDPDTAQVQVQNKVQQAESRLPTEVQQS 126

Query: 127  QVFKNNGSGQASVYINL--SSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVM 184
             +          + + +   +     + + D++   + D  + + GV S+ V G  Y  M
Sbjct: 127  GITVEKSQSNFLLIMGVYDKTDTASSSDIADWLVSNMQDPLARVEGVGSLQVFGAEY-AM 185

Query: 185  YVRIKPELMAGRGVATSDISDALNKENLESPGGQV------RNDSTVMSVRTARGYQSAE 238
             + + P  +A   +  SD+  A+  +N++   G++             +VR     Q+ +
Sbjct: 186  RIWLDPAKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNAQQLTATVRAQSRLQTVD 245

Query: 239  DFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAK 298
             F+ ++VK  S G  +++ DVA V +G+E+  +T K +G     M ++    AN L  A 
Sbjct: 246  QFKNIIVKSQSSGAIVHISDVARVEMGSEDYTATAKLNGHPAAGMAVMLSPGANALNTAT 305

Query: 299  RVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRA 358
             V +++ + ++ +P+G  +A   DST FI+ S+ +V  TLF    LV++V+Y+F+  +RA
Sbjct: 306  AVKDKIAEFKKSMPEGYDVAYPKDSTEFIKISVEDVIQTLFEAIILVVVVMYLFLQNIRA 365

Query: 359  TLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHI-ERG 417
            TLIPA+ VPV L+  F     FG+SIN +TL A++L+IGL+VDDAIVVVEN+   + + G
Sbjct: 366  TLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVERIMRDEG 425

Query: 418  EKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLI 477
                 A  K   E+  A++A  LVL  VFLP++F  G  G+++ +FSV +  A+  S ++
Sbjct: 426  LPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMFLSVVV 485

Query: 478  ALTLTPVLGSKLLK--ANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAAC 535
            ALTLTP L   +L   A  K G F    +R ++R E GY+  V RA+R R    +VI A 
Sbjct: 486  ALTLTPALCGAILSHTAPHKKGFFG-AFNRFYSRTERGYQNKVLRALR-RSGGMLVIYAL 543

Query: 536  IGGSYGLMQL-VPAQLTPSEDRG-VIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGF 593
            + G+ G   L +P    P+ED+G ++  +   A AT+  R A     V +  +       
Sbjct: 544  LCGAMGFAMLKLPGSFLPTEDQGEIMVQYTLPAGATTV-RTAEVSRQVREWFLTKEKANT 602

Query: 594  LKSFSIQSPAFGGNAGDQTGFVIMILEDWNDR---TVTAQEALSQVRKALAGIPDVRVFP 650
               F+I+  +F G +G   G   + L++W++R     TAQ    +  + L+ I D  +F 
Sbjct: 603  NVIFTIEGFSFSG-SGQNAGMAFVSLKNWSERKGYANTAQAIALRATQELSAIRDATIFA 661

Query: 651  FMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPE 705
              P    G  +   F       GG+D   L     +L  EA +   +     +   + P+
Sbjct: 662  MTPPAVDGLGQSNGFTFELMASGGTDRDALLKLRNQLIGEANQDSSLHAVRANDLPQMPQ 721

Query: 706  LVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADL 765
            L V ID  +A  LG+S+  ++DTL    GG  V  F++RG    VY++GD +     +DL
Sbjct: 722  LQVDIDNNKAVSLGLSLSDVTDTLSSAWGGTYVNDFIDRGRVKKVYIQGDSDYRAVPSDL 781

Query: 766  SQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQ 825
            ++ ++R +   +                 L  YN   +  I     +G + G A+  ++Q
Sbjct: 782  NKWFVRGSDSTMTPFSAFATTRWEYGPESLVRYNGSAAYEIQGENASGASSGTAMSKMEQ 841

Query: 826  KAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTV 885
             A   LP+  + ++SG S   K        ++AL++LV +L LAA +ES+  P+ V+L +
Sbjct: 842  LANS-LPSGSTWAWSGLSLQEKLASGQAMSLYALSILVVFLCLAALYESWSVPISVILVI 900

Query: 886  PMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIID 945
            P+GV G  +   + G   ++Y Q+ ++  IG+ +KN ILIVEFA      G    +A + 
Sbjct: 901  PLGVLGAAVAASLRGLNNDVYFQVALLTTIGLSSKNAILIVEFAEAKVAEGYSLTRAALR 960

Query: 946  ASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005
            A+  RLRPI+MT+   +AG  PL V+TGAG  SR+A+GT I  G   ATL+ +  +P  +
Sbjct: 961  AAQTRLRPIIMTSLAFIAGVTPLAVATGAGANSRVAIGTGIIGGTLAATLLAIFFVPLFF 1020

Query: 1006 RLI 1008
             L+
Sbjct: 1021 VLV 1023