Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Enterobacter asburiae PDN3

 Score =  486 bits (1251), Expect = e-141
 Identities = 321/1031 (31%), Positives = 523/1031 (50%), Gaps = 28/1031 (2%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +++  ++RPV A VL+++L + G ++  KL V + P I  P V++S  Y GA A  ++  
Sbjct: 1    MANFFIQRPVFAWVLAIILMIAGGLAILKLPVAQYPTIAPPAVAISATYPGADAQTVQDT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +T V+E  + GI  +  ++S S + G   IT+TFE G D +     +++ +  A   LP+
Sbjct: 61   VTQVIEQNMNGIDKLMYMSSTSDSAGNVTITLTFESGTDPDIAQVQVQNKLQLAMPLLPQ 120

Query: 122  EADDPQVFKNNGSGQASVYINLSSSEMDRTQ--LTDYIERVLLDRFSLISGVSSVDVSGG 179
            E     +     S    +     S   D TQ  ++DY+   + D  S  SGV  V + G 
Sbjct: 121  EVQQQGIGVEKSSSSFLLVAGFVSDNKDLTQNDISDYVASNVKDAISRTSGVGDVQLFGA 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + +    M    +   DI + L  +N +   GQ+    ++       S+     
Sbjct: 181  QY-AMRIWLDSNTMNKYQLTPQDIINQLKTQNDQIAAGQLGGTPSIPGQQLNASIIAQTR 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             +S E+F  + +K   DG+ ++LKDVA + +G EN N   K +G     +GI   + AN 
Sbjct: 240  LKSPEEFGRVTLKVNQDGSMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANA 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            L+ A  +  ++ ++QQF P+G ++   YD+T F++ SI EV  TLF    LV LV+Y+F+
Sbjct: 300  LDTAAAIKSKLAQLQQFFPQGLKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFH- 412
              LRATLIP + VPV L+  F     FGFSIN +T+  ++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNLRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 413  HIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
             +E    P  A  K   ++  A++   +VL  VF+P++F  G  G ++ +FS+ +  A+ 
Sbjct: 420  MVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMA 479

Query: 473  FSSLIALTLTPVLGSKLLKA-----NVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWA 527
             S L+AL LTP L + LLK      +   G F    + LF +    Y   VS  +R    
Sbjct: 480  LSVLVALILTPALCATLLKPVSGDHHENKGGFFGWFNALFDKSVEHYSNSVSGILRKAGR 539

Query: 528  APVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMP 587
               V    +GG   L   +P    P ED+GV  + V+     +  R    +D V+   + 
Sbjct: 540  YLAVYVIIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLPAGATQTRTQQVLDQVQDYYLN 599

Query: 588  LLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDRTVT---AQEALSQVRKALAGIP 644
                     F++   +F G  G   G   + L+ W +R  +    +  + +  KA + I 
Sbjct: 600  NEKANVESVFTVNGFSFSGQ-GQNAGIAFVSLKPWEERPGSENGVEAIVGRATKAFSQIT 658

Query: 645  DVRVFPF-MPG-FRGGSNEPVQFVL---GGSDYSELKTWAEKLEEEAEKSP-FMTGADID 698
            D  VFPF +P     G+     F L       Y++L     +L     + P  +     +
Sbjct: 659  DGLVFPFNLPAIIELGTATGFDFELIDQANLGYTQLTQARNQLLSMVHEHPDLLVRVRPN 718

Query: 699  YSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENS 758
              E TP+  + +D+++A  LG+S+  ++ T+   LGG  V  F++ G    VY++ D   
Sbjct: 719  GLEDTPQFKLDVDQEKAQALGVSLSDVNQTISTALGGSYVNDFIDHGRVKKVYVQADAKF 778

Query: 759  FNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQ 818
                 D++ +Y+R+A GE+V     +    V  + RL  YN   S+ I      G + G+
Sbjct: 779  RMLPGDINNLYVRSANGEMVPFSAFSNAHWVYGSPRLERYNGMPSMEILGESAPGKSTGE 838

Query: 819  ALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINP 878
            A+  ++  A + LP+ I   ++G S   + + +    ++A++L+V +L LAA +ES+  P
Sbjct: 839  AMAMMESLAAK-LPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 879  LVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDR-GV 937
              VML VP+GV G  L   + G   ++Y Q+G++  IG+  KN ILIVEFA  L D+ G 
Sbjct: 898  FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 938  EFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVT 997
               +A ++AS  RLRPILMT+   + G +PL++STGAG  ++ AVGT +  GM  ATL+ 
Sbjct: 958  GIIEATLEASRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMLSATLLA 1017

Query: 998  LLVIPAMYRLI 1008
            +  +P  + ++
Sbjct: 1018 IFFVPVFFVVV 1028