Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1037 a.a., multidrug efflux RND transporter permease AcrD from Escherichia coli ECRC62

 Score =  493 bits (1270), Expect = e-143
 Identities = 307/1034 (29%), Positives = 531/1034 (51%), Gaps = 36/1034 (3%)

Query: 3    LSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQ 62
            +++  + RP+ A VL++LLC+ G ++   L V + PD+  P V V+  Y GASA  +E+ 
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT 60

Query: 63   ITSVLEDQLAGISGIDEITSVSRN-GMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPE 121
            +T V+E  + G+  +  ++S S   G + +T++F+ G D +  V  +++ +  A R LP+
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 122  EADDPQVF--KNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGG 179
               +  V   K   +   ++    +   MD+  + DY+   + D  S ++GV  +D  G 
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 180  LYKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTV------MSVRTARG 233
             Y  M + + P  +    +   D++DA+  +N +   GQ+    +V       ++     
Sbjct: 181  QYS-MRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSL 239

Query: 234  YQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANP 293
             Q+ E F  + ++   DG+ + L DVA V +GAE  +   + +G     +G+   S AN 
Sbjct: 240  LQTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANE 299

Query: 294  LEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI 353
            +  A+ V   +D++ Q+ P G    + Y++T F++ SI +V  TL     LV LV+Y+F+
Sbjct: 300  MATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFL 359

Query: 354  GQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHH 413
               RATLIP + VPV L+  F   Y FG+S+N +T+ A++L+IGL+VDDAIVVVEN+   
Sbjct: 360  QNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERI 419

Query: 414  I-ERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVI 472
            + E G  P  A  K   ++  A++   +VL  VF+P++F  G  G ++ +FS+ +  A++
Sbjct: 420  MSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMV 479

Query: 473  FSSLIALTLTPVLGSKLLKANVKPGR----------FNQLIDRLFARLESGYRQVVSRAI 522
             S L+A+ LTP L + LLK  +K G           FNQ+ +R   R E G  +++ R++
Sbjct: 480  LSVLVAMILTPALCATLLKP-LKKGEHHGQKGFFAWFNQMFNRNAERYEKGVAKILHRSL 538

Query: 523  RWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVE 582
            RW     V+    +GG   L   +P    P EDRG+  + V+    ++  +    ++ +E
Sbjct: 539  RW----IVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIE 594

Query: 583  QRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWNDR---TVTAQEALSQVRKA 639
            +          +  F+      GGN G     + + L+DW++R   T T+   + +  KA
Sbjct: 595  KYYFTHEKDNIMSVFATVGSGPGGN-GQNVARMFIRLKDWSERDSKTGTSFAIIERATKA 653

Query: 640  LAGIPDVRVFPFMPGFRGGSNEPVQFVL-----GGSDYSELKTWAEKLEEEAEKSPFMTG 694
               I + RV    P    G      F +      G+ +  L     +L   A ++P +T 
Sbjct: 654  FNKIKEARVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTR 713

Query: 695  ADIDYSEKTPELVVTIDKQRAAELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRG 754
               +  + +P+L + ID+++A  LG+ +  I+DTL+   G   V  F++RG    VY++ 
Sbjct: 714  VRHNGLDDSPQLQIDIDQRKAQALGVDIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQA 773

Query: 755  DENSFNNAADLSQIYMRTATGELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGY 814
                     D++  Y+R   G +V             + RL  YN   +V I      G 
Sbjct: 774  AAPYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGV 833

Query: 815  TLGQALDFLDQKAQEILPNDISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFES 874
            + G A+D ++   ++ LPN   + ++  S   + + +    ++A++LLV +L LAA +ES
Sbjct: 834  STGTAMDIMESLVKQ-LPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYES 892

Query: 875  FINPLVVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRD 934
            +  P  VML VP+GV G  L  ++ G   ++Y Q+G++ +IG+  KN ILIVEFAN++  
Sbjct: 893  WSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQ 952

Query: 935  RGVEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFAT 994
            +G +  +A + A  +RLRPILMT+   + G +P+  STGAG   + AVGT +  GM  AT
Sbjct: 953  KGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISAT 1012

Query: 995  LVTLLVIPAMYRLI 1008
            ++ +  +P  + L+
Sbjct: 1013 ILAIYFVPLFFVLV 1026