Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1029 a.a., multidrug efflux RND transporter permease subunit MdtC from Dickeya dianthicola ME23

 Score =  492 bits (1266), Expect = e-143
 Identities = 313/1012 (30%), Positives = 526/1012 (51%), Gaps = 28/1012 (2%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RPVA  +L++ + + G++ +  L V  +P ++ PV+SV+    GAS   + S + + L
Sbjct: 8    IHRPVATTLLALAIALCGLIGYQLLPVSPLPQVDYPVISVTATLPGASPETMASSVATPL 67

Query: 68   EDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEEADD-P 126
            E  L  I+G++E+TS S  G +RI + F L  D+N    D++ A+  AQ  LP      P
Sbjct: 68   ERSLGRIAGVNEMTSTSSLGNTRIILQFALDRDINGAARDVQAAINAAQSLLPSSMPSRP 127

Query: 127  QVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVMYV 186
               K N S    + I L+S      QL DY    +  R S I GV  V + G     + V
Sbjct: 128  YYRKVNPSDAPIMIITLTSDTYGPGQLYDYASTQIAQRVSQIDGVGDVTIGGSSLPAVRV 187

Query: 187  RIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFEYLVVK 246
             + P+ +  +GV+   +  ++ + N+  P G V + ST   ++T    ++A+ +  L+V 
Sbjct: 188  ALNPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGSTHYQIQTNDELKTADAYRSLIV- 246

Query: 247  RASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDK 306
              ++G P+ L DVA V    +N  +   ++    V + I    DAN +     +   + +
Sbjct: 247  HYNNGAPVRLSDVATVKDSVQNVLNAGMTNAKPAVLVMIRRAPDANIISTVDAIRASMPE 306

Query: 307  VQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATLIPAVTV 366
            +Q  LP    L +  D +  I  S+ +V  +L I   LVILV+++F+   RATLIPA+ V
Sbjct: 307  LQALLPASITLNVAQDRSPTIRASLRDVERSLTIAVSLVILVVFLFLRSGRATLIPAIAV 366

Query: 367  PVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKPLLAAYK 426
            PVSLI  F A Y  GFS+N ++LMAL ++ G VVDDAIVV+ENI  HIE G KPL A+ +
Sbjct: 367  PVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENISRHIEAGMKPLQASLQ 426

Query: 427  GTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLG 486
            G REVGF V++ +L L+ VF+P+ FMDG+ G LF EFS+ L++A++ S L+++TLTP++ 
Sbjct: 427  GVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRLFREFSITLSVAILISLLVSITLTPMMC 486

Query: 487  SKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRW-----RWAAPVVIAACIGGSYG 541
            ++LL+ +      +Q   R F RL  G +Q   R++RW     RW   +V+   IG S  
Sbjct: 487  ARLLRLHTPR---SQPRTRGFNRLLLGLQQGYGRSLRWVLNHSRWVM-MVLLCTIGLSVW 542

Query: 542  LMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMD--LVEQRLMPLLGQGFLKSFSI 599
            L   +P    P +D G +  F++   + S+  M   +   +   R  P +          
Sbjct: 543  LYISIPKTFFPEQDTGRLMGFIQADQSISFQAMKRKLQDFMTIVRADPAVD--------- 593

Query: 600  QSPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPF-MPGFRGG 658
                F G     +G + + L+    R V+AQ+ ++++R  LA  P   ++   +   R G
Sbjct: 594  NVTGFTGGMRTNSGSMFISLKPLAQRDVSAQQVITRLRANLAKEPGANLYLMAVQDVRIG 653

Query: 659  SNEP---VQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRA 715
              E     QF L   D + L+TW  K+ +   K P +     D  +K  EL++  D+   
Sbjct: 654  GREANGGYQFSLLSDDLAVLRTWEPKIRDALSKLPQLADVSSDQQDKGAELMMVYDRDAM 713

Query: 716  AELGISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTATG 775
            A LGI+V S++  L    G ++++T  +   +Y V +  D     + + L ++++    G
Sbjct: 714  ARLGINVASVNALLNNAFGQRQISTIYQPMNQYKVVMEVDSAYTQDPSSLDKMFVINNDG 773

Query: 776  ELVTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI-LPND 834
            + + L    R     + + + H     + T++ NL  G +L  A   +++    + +P+ 
Sbjct: 774  KPIPLSFFARWQPANAPLAVNHQGLSAAATLSFNLPEGASLSDATTAIERTMTTLRVPST 833

Query: 835  ISVSYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFL 894
            +   ++G +  F+++Q S  ++   A+L  Y+VL   +E+  +PL ++ T+P    G  L
Sbjct: 834  VRGQFAGTALAFQQSQHSQVVLIIAAILTVYIVLGILYENVAHPLTILSTLPSAGVGALL 893

Query: 895  GLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRG-VEFEKAIIDASARRLRP 953
             L + G+  ++ + IG+++LIG+V KN I++V+FA   +  G +   +AI  A   R RP
Sbjct: 894  ALELFGKPFSLIALIGILLLIGIVKKNAIMMVDFALVAQREGKLPAREAIFRACMLRFRP 953

Query: 954  ILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005
            I+MT    L G++PL++S G G E R  +G  I  G+  + L+TL   P +Y
Sbjct: 954  IMMTTMAALFGALPLVLSNGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVY 1005