Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1035 a.a., putative efflux pump membrane transporter TtgB from Alteromonas macleodii MIT1002

 Score =  912 bits (2356), Expect = 0.0
 Identities = 463/1018 (45%), Positives = 686/1018 (67%), Gaps = 7/1018 (0%)

Query: 1    MWLSDVSVKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIE 60
            M LSDVSVKRPV A V+++LL +FG+V+FT L++RE PDI+ P+VSVST Y GASA I+E
Sbjct: 1    MLLSDVSVKRPVFATVINLLLIIFGIVAFTMLSLREYPDIDPPIVSVSTTYTGASANIVE 60

Query: 61   SQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLP 120
            ++IT +LED+++GI GI  +TS SRNG S IT+ F+L  D++   +D+R+ V+RA  +LP
Sbjct: 61   TRITQLLEDRISGIEGIKNVTSTSRNGRSDITIEFKLSRDIDAAANDVRERVSRALNNLP 120

Query: 121  EEADDPQVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGL 180
            ++AD P+V K N    A V+ NL S+ ++  +LTDY ERVL+DR S++ GV+ V + GG 
Sbjct: 121  DQADPPEVSKANSDESAVVWYNLRSTNLNTMELTDYAERVLVDRLSIVDGVARVQIGGGR 180

Query: 181  YKVMYVRIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDF 240
               M V +    MA RG+  +D+   +  EN+E P G+V +      VR AR + + +DF
Sbjct: 181  RYAMKVFLDRNAMAARGITVNDVEQVIRTENVELPAGEVESTDRNFEVRVARTFLTPDDF 240

Query: 241  EYLVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRV 300
              L V    +G  + L ++A V + AE++ + F+ DG+  + +GI+ QS AN L+VA+  
Sbjct: 241  AALTVAIGDNGYLVRLGEIAHVELTAEDDETEFRGDGVNMIGLGIIKQSKANTLDVARAA 300

Query: 301  HEEVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATL 360
              ++++++  LP    +   YDS+VFIE SI EVY TL I   +V++V+Y+F+G +RATL
Sbjct: 301  KAQIERIEATLPDNIFIVPSYDSSVFIEASIDEVYETLGIAMLMVVIVIYLFLGNIRATL 360

Query: 361  IPAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKP 420
            IPAVTVPVS+I+AF+  Y  GFSINL+TL+A++L+IGLVVDDAIVV+ENI+  IE GE P
Sbjct: 361  IPAVTVPVSIIAAFIVMYALGFSINLLTLLAMVLAIGLVVDDAIVVLENIYRRIEMGEPP 420

Query: 421  LLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALT 480
            +LAAY+G +EVGFAVIATTLVL+ VF+P+ F++G +G LFTEF++ +A AV FSS  ALT
Sbjct: 421  ILAAYRGAKEVGFAVIATTLVLISVFVPLVFLEGNIGRLFTEFALAIAAAVAFSSFTALT 480

Query: 481  LTPVLGSKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSY 540
            L+P++ SK+LK   +   F   +D+ F++LE+GY   + + +       +++A  I    
Sbjct: 481  LSPMMASKILKKRTRSSGFGSWMDKKFSKLENGYFNTLGKTLHQPILMLLMLAIAIVALV 540

Query: 541  GLMQLVPAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQ 600
             L + V ++  P EDRG  F  +   +  S+   A N++ +E  LMP    G +    ++
Sbjct: 541  QLSEKVASEFVPKEDRGNFFILMNAQEGASFESNAKNLEKIESILMPYRESGKINRLLVR 600

Query: 601  SPAFGGNAGDQTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVFPFM-PGFRGGS 659
            +P FGGNA    G  I+   DW++R  +    + ++   L  +PDVR F  M  G  GG 
Sbjct: 601  TPGFGGNA----GIAIVGSADWDERDFSTFSLMDEISAKLNSVPDVRAFAIMRSGISGGG 656

Query: 660  -NEPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAEL 718
               PVQFVL G  Y  L  W + + ++A ++P +   D DY E +P+L+V I++ R A+L
Sbjct: 657  LGRPVQFVLQGDTYENLVEWRDIVLQKAAQNPRLIRLDSDYKETSPQLLVNINRDRVADL 716

Query: 719  GISVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTA-TGEL 777
            G+S+  I  TLEVMLG ++V+TF++RGEEYDV + G E  F +   +  +Y+R++ TGEL
Sbjct: 717  GVSISDIGGTLEVMLGQRRVSTFLDRGEEYDVIMEGIEEDFRSPNSIENLYVRSSRTGEL 776

Query: 778  VTLDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEILPNDISV 837
            + +D +   +E A++ +L  YN+ ++VTI+ANL  GYTLGQAL++L+      LP+++S+
Sbjct: 777  IPMDNLLTFEEQATSAQLNRYNRMRAVTISANLADGYTLGQALEYLENIVSTELPDNVSI 836

Query: 838  SYSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLF 897
             Y GES+ ++E  +S   VF LAL V YL+LAAQFES+++PLV+MLTVP+ + G ++GLF
Sbjct: 837  DYKGESQLYQEAGNSFVYVFMLALAVTYLILAAQFESWVHPLVIMLTVPLALVGAYIGLF 896

Query: 898  VMGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGVEFEKAIIDASARRLRPILMT 957
                 +NIYSQIG++MLIG+  KNGILIVEFANQLRD G+EFE A+  A+A+RLRPI+MT
Sbjct: 897  FSDMTINIYSQIGLVMLIGLAAKNGILIVEFANQLRDAGMEFEYALKRAAAQRLRPIVMT 956

Query: 958  AFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMYRLISGSTQAP 1015
             FTT+  S+PL++++G G ESR+ +G VIF G+  +  +TL V+P  Y  ++ +T +P
Sbjct: 957  GFTTVFSSLPLVLASGPGAESRMVIGMVIFSGVLVSAFMTLYVVPTAYSWLARNTGSP 1014