Pairwise Alignments

Query, 1036 a.a., AcrB/AcrD/AcrF family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1046 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  480 bits (1236), Expect = e-139
 Identities = 307/1008 (30%), Positives = 523/1008 (51%), Gaps = 18/1008 (1%)

Query: 8    VKRPVAALVLSMLLCVFGVVSFTKLAVREMPDIESPVVSVSTRYQGASATIIESQITSVL 67
            + RPVA  +L++ L + G+  F  L V  +P ++ P ++VS+   GAS   + + +T+ L
Sbjct: 7    INRPVATTLLAIGLVLAGLAGFRLLPVAALPKVDFPTINVSSSLSGASPQTMATSVTTPL 66

Query: 68   EDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVARAQRSLPEE-ADDP 126
              Q   I G+ EI++ +  G S I + F+L  D++   +D++ A++RAQR LP      P
Sbjct: 67   VKQFETIPGVSEISATNTLGNSSIVLQFDLNRDIDAAAADVQAAISRAQRQLPSNMTTTP 126

Query: 127  QVFKNNGSGQASVYINLSSSEMDRTQLTDYIERVLLDRFSLISGVSSVDVSGGLYKVMYV 186
               K N +    + + ++S EM  +++ +  E ++    S ISGV+ V + G     + +
Sbjct: 127  SYRKTNPADAPVLLLAVNSKEMPTSKVDEIAENIISPLLSTISGVAQVSIYGAQTYAVRI 186

Query: 187  RIKPELMAGRGVATSDISDALNKENLESPGGQVRNDSTVMSVRTARGYQSAEDFEYLVVK 246
             + P  +  RG+    ++ A+ + N + P G ++ D+  +++       +A  F  LVV 
Sbjct: 187  GLDPTQLQARGLGVDTVTTAITQANNQVPVGALQTDNQRLTIEADTQRTNAAAFRSLVVS 246

Query: 247  RASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDK 306
              ++G PI+L D+A+V    +N N+    DG   + + +  Q DAN +EV   +  ++  
Sbjct: 247  -TNNGAPIHLGDIANVTDSIDNTNAGSWFDGEQAIILAVQRQPDANTVEVVDAIKAKLPA 305

Query: 307  VQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFIGQLRATLIPAVTV 366
            +QQ LP    + +  D++  I+ +IS+V  TLF+T GLV+ V+Y+F G L AT+IP + V
Sbjct: 306  LQQQLPPSVNIHVMNDASTAIKDAISDVQFTLFLTIGLVVAVIYLFTGHLTATIIPGLAV 365

Query: 367  PVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGEKPLLAAYK 426
            P+SLI+AF   Y  G+SI+ I+L+ L LS+GLVVDDAIV++ENI    E+G     AA +
Sbjct: 366  PLSLITAFGMMYVLGYSIDNISLLGLTLSVGLVVDDAIVMLENILRLHEKGLPMREAALQ 425

Query: 427  GTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLG 486
            G  EV   +++ ++ LV VF+PI  M G++G LF EF +++ +A++ S+L++LT+TP+L 
Sbjct: 426  GAAEVSGTILSMSVSLVAVFIPILLMGGVIGRLFNEFGMVVTLAIMASALVSLTVTPMLA 485

Query: 487  SKLLKANVKPGRFNQLIDRLFARLESGYRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLV 546
            S+L   + +P    +  D  F R    Y + V   +  R        A +  S  L + +
Sbjct: 486  SRLSGHSSRPPAIIRWFDAGFERTLRLYGKAVGWCLSHRRIVLASFLASVAASVYLFETL 545

Query: 547  PAQLTPSEDRGVIFSFVRGADATSYNRMAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGG 606
            P+   P ED G +    +  +  SY  M      V  ++        + S        GG
Sbjct: 546  PSSFFPQEDIGRLSVSTQAREDISYTAMRDLQAQVADQIRKNPAVVHVTSI------VGG 599

Query: 607  NAGD--QTGFVIMILEDWNDRTVTAQEALSQVRKALAGIPDVRVF--PFMPGFRGG--SN 660
            N+ +    G + + L+   +R   +Q  L+++ +A + +  +R +  P      GG  S 
Sbjct: 600  NSRNPLNNGSMFVELKPKEERAPISQ-VLTELGQATSKVAGIRTYINPQQSLRFGGRSSA 658

Query: 661  EPVQFVLGGSDYSELKTWAEKLEEEAEKSPFMTGADIDYSEKTPELVVTIDKQRAAELGI 720
               Q V+ G +      W+ KL E   +    T    D         +++D ++AA  GI
Sbjct: 659  SQYQLVVQGLNADTTNEWSNKLMEAMRRDHTFTAVTTDAQNGAIAATISVDPEKAAAFGI 718

Query: 721  SVKSISDTLEVMLGGKKVTTFVERGEEYDVYLRGDENSFNNAADLSQIYMRTA-TGELVT 779
            +   +  TLE+  GG         G+ YDV +  D +   N   LS I + +A +G LV 
Sbjct: 719  TNDQLRKTLEMSFGGYTAAQIQSTGDSYDVIVEFDSSKSWNDDFLSDINILSAKSGVLVP 778

Query: 780  LDTVTRIDEVASAIRLAHYNKQKSVTITANLEAGYTLGQALDFLDQKAQEI-LPNDISVS 838
            L     +    + + +    +  S TI+ NL  G  L  A   +DQ    I LP D+  S
Sbjct: 779  LSNFASLTRTQAPVTINQTGQLVSTTISFNLPDGVALSDATSRIDQIKTTIGLPQDVFTS 838

Query: 839  YSGESKDFKENQSSVAIVFALALLVAYLVLAAQFESFINPLVVMLTVPMGVFGGFLGLFV 898
            Y G +  F+++Q +  ++   A+L  Y+VL   +ESFI+PL ++  +P   FG  + L V
Sbjct: 839  YGGTAAIFQQSQGNTGVLILAAVLTIYVVLGVLYESFIHPLTILSGLPAAAFGALVALKV 898

Query: 899  MGQGMNIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGVEFEKAIIDASARRLRPILMT 957
            MG   +I + IG++MLIG+V KN I++++ A +L R++      AI +A  RR RPI+MT
Sbjct: 899  MGMDFSIIALIGLLMLIGIVKKNAIMMIDVAVELMREKAEPPAIAIHEACVRRFRPIMMT 958

Query: 958  AFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLVTLLVIPAMY 1005
             F  L G++P+ + +GA  E R  +G  +  G+  + L+TL + P ++
Sbjct: 959  TFCALLGALPIALGSGASSELRQPLGIAVVGGLIVSQLLTLFITPVIF 1006