Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 373 a.a., Multidrug resistance protein MdtE from Xanthobacter sp. DMC5

 Score =  139 bits (351), Expect = 9e-38
 Identities = 88/334 (26%), Positives = 172/334 (51%), Gaps = 17/334 (5%)

Query: 15  LMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIA 74
           ++  A+ S ++P Q  A +V T +     +      VG ++AE   D+A E +G V  I 
Sbjct: 29  MIKQALASLRDPPQTVATTVATLTPWQSTVK----AVGSVRAEAGADLALESSGTVAKIN 84

Query: 75  VQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQR 134
            ++  +V++GQ+L++L D++  A L   KA        L   +  LK +A++   ID+  
Sbjct: 85  FKSGDEVREGQVLLQLRDEQEVANLAALKATADVSAIILNRDQEQLKIHAVSQATIDSDT 144

Query: 135 ARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDL 194
           A ++   A++   QA +    + APF G +G      G++VSAG+ ++TL +L+ + +D 
Sbjct: 145 ANLKKALAQVAEQQAVVEKKTLKAPFSGRLGIRSVDLGQYVSAGTTVVTLQSLNPIFIDF 204

Query: 195 QIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLK 254
            +P++ L ++  G  V+ + + +P   FEG+V A+  +++  + N+++R  F N D RL 
Sbjct: 205 YLPQQALAEVKAGQTVKATVDTYPGQAFEGTVTAISPKVDVTSRNVQLRAEFRNDDHRLT 264

Query: 255 PGMLMSARIHFPAISAP----IIPVQALEYSGTKRFVYVIGEDN------VAKRREVSLG 304
           PGM  +  +   A+  P     +P  A+  +     V+V+ +         A++  V  G
Sbjct: 265 PGMFATVEV---AVGTPDAFVTVPQTAIMANPYGDIVFVVEKKEGSATGLAARQVFVKTG 321

Query: 305 ARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVS 338
           A   +Q+ +  G++ G+++V  G + + + + VS
Sbjct: 322 ATRGDQIAVLSGIKAGDQVVAAGQMKLHNGSLVS 355