Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  133 bits (335), Expect = 7e-36
 Identities = 100/353 (28%), Positives = 169/353 (47%), Gaps = 33/353 (9%)

Query: 26  PNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQ 85
           P  P A  V   +V S +I+      G+L+A + VD+ + VAG V  +  +    VK+G 
Sbjct: 47  PAAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGD 106

Query: 86  ILIKLDD-------DKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQ----- 133
           +L+ +D        ++A+A +  A+A     + +    +RL    AI   E D +     
Sbjct: 107 LLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGR 166

Query: 134 --RARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNL---- 187
              A +   QA L +A+ NL    + AP  G +G I+ + G  V+AG     L  L    
Sbjct: 167 EADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVS 226

Query: 188 ---SLMRLDLQIPERYLPQLSKGMKVQGSSEAWP---------NVQFEGSVVAVDSRINQ 235
              +    D Q+  R L  L  G   +G  E+ P            F G +  +D++++ 
Sbjct: 227 PIYASFDADEQVITRALKDLPTGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQVDA 286

Query: 236 ETLNLRVRVHFPNPDQRLKPGMLMSARI-HFPAISAPIIPVQALEYSGTKRFVYVIGEDN 294
           ++  +RVR  F N D  L PG     R+    + SA ++  +A+     K+FV V+GED+
Sbjct: 287 KSGTVRVRASFDNKDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGEDS 346

Query: 295 VAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVS--EVTVEGR 345
            A  REV+LGA +    V+ KGL+ G++++V G+ ++R  A V+  +VT++ +
Sbjct: 347 KATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALVAPQQVTMDAK 399