Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

 Score =  152 bits (384), Expect = 1e-41
 Identities = 101/330 (30%), Positives = 166/330 (50%), Gaps = 7/330 (2%)

Query: 14  LLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMI 73
           L M      A+    PPA  V   + Q  Q+++ LS +G L+A + V++ AEV G+V  I
Sbjct: 25  LAMKLRPAHAEGGGMPPA-KVAVATAQKTQVARFLSGIGTLEANRQVEVPAEVEGRVAKI 83

Query: 74  AVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQ 133
                 +V+ GQ+L++L+D   Q  +    A   + +  L    RLL + A T  +++  
Sbjct: 84  LFTPGGEVRAGQLLVQLNDAPEQGDMERLTAQRANAKALLERTRRLLPQQAATQEQLEQA 143

Query: 134 RARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLD 193
           +A  +     L  AQA L    I APFDG +G    + G++V AG  L++L +   +  +
Sbjct: 144 QAAFDQASGDLRRAQAVLEQKRIKAPFDGVLGIRRVNLGQFVRAGDALVSLTDSRTLFAN 203

Query: 194 LQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRL 253
           L +PE  LP L +  +V  S +A+P   F+G +  ++ +I  +T  +R++    N D  L
Sbjct: 204 LTLPETALPVLKRNQQVALSVDAYPGRVFQGRLSTIEPQIGSDTRTVRLQATIDNADGAL 263

Query: 254 KPGMLMSARIHFPA-ISAPIIPVQALEYSGTKRFVYVI-----GEDNVAKRREVSLGARV 307
            PGM ++ ++  PA   A  +P  A+ YS     V+V+     G+   A++  V  G R 
Sbjct: 264 TPGMFVNGKVALPARPDAITVPETAITYSTHGDSVFVVRPAEKGDGFTAQQVFVKAGERQ 323

Query: 308 ENQVVIEKGLQIGEKIVVQGIVNMRDNARV 337
           +  VVIE GL  G+K+V  G + +   A V
Sbjct: 324 DGLVVIENGLAPGDKVVTSGQLRLYTGAAV 353