Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., efflux RND transporter periplasmic adaptor subunit from Variovorax sp. OAS795

 Score =  131 bits (330), Expect = 3e-35
 Identities = 108/371 (29%), Positives = 173/371 (46%), Gaps = 36/371 (9%)

Query: 6   VLSLTLLTLLMNSAVLSAKEP---NQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDI 62
           VL++    L M+S    A  P    Q   +SV   +V S +I+      G+L+A Q VD+
Sbjct: 26  VLAVAAAVLGMHSFKAEATAPAAAQQGTPVSVA--AVASSEINAWDEFSGRLEAVQRVDV 83

Query: 63  AAEVAGKVDMIAVQANQQVKKGQILIKLDD-------DKAQAALVEAKAYLQDEQRKLTE 115
            + VAG V  +  +    VK+G +LI +D        ++A+A +  A+A     + +   
Sbjct: 84  RSRVAGAVQAVHFREGALVKQGDLLITIDPAPYAAEVERAEAQVASAQARQAFSRSEQER 143

Query: 116 YERLLKRNAITPTEIDAQ-------RARVEIGQARLNAAQANLADLHITAPFDGTVGFID 168
            +RL  + AI   E D +        A +   QA L +A+ NL    + AP  G +G ++
Sbjct: 144 AKRLWDQQAIAQREYDERVNASREADANLRASQASLQSARLNLGYTQVRAPVSGRIGKLE 203

Query: 169 FSRGKWVSAGSELLTLDNL-------SLMRLDLQIPERYLPQLSKGMKVQGSSEAWP--- 218
            + G  V+AG     L  L       +    D Q+  R L  L  G   +G  E+ P   
Sbjct: 204 VTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPSGASARGQIESIPVQM 263

Query: 219 ------NVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARI-HFPAISAP 271
                    F G +  +D++++  +  +RVR  F N D  L PG     R+      +A 
Sbjct: 264 GTSGFDGTPFIGKLQLIDNQVDARSGTVRVRASFDNKDGALIPGQFARIRMGQARNDTAL 323

Query: 272 IIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNM 331
           ++  +A+     K+FV V+GEDN A  REV+LGA +    V+ KGL+ G+++VV G+ ++
Sbjct: 324 LVSERAIGTDQNKKFVMVVGEDNKAMYREVTLGASINGLRVVSKGLKAGDRVVVNGLQHI 383

Query: 332 RDNARVSEVTV 342
           R  A V   TV
Sbjct: 384 RPGALVVPQTV 394