Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  127 bits (318), Expect = 6e-34
 Identities = 96/351 (27%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 3   KNTVLSLTLLTLLMNSAVLSAKEPNQPPAI--SVVTESVQSQQISQSLSVVGKLKAEQSV 60
           K ++LS  + + L+ +    A + + P  +    +TE V SQ+ S  L+  G ++A Q  
Sbjct: 12  KRSLLSAVIASALLLAGCGEAPQISAPAPVVKPALTEIVASQRASD-LTFNGVVRAAQRA 70

Query: 61  DIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLL 120
           D+A  ++G++  IAV+   QVKKGQ+L  LD   A+ AL  A+  L++ +++    + + 
Sbjct: 71  DLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIF 130

Query: 121 -KRNAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGS 179
            K  AI+  E+D    R ++ + R+  A+  L    ITAPFDG +          V A  
Sbjct: 131 EKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQ 190

Query: 180 ELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLN 239
            ++ L +L+ + + ++IP R +    +  +      A PN QF+  +    ++ + ++  
Sbjct: 191 VIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQT 250

Query: 240 LRVRVHFPN-PDQRLKPGMLMSARIHFPAISAP-------IIPVQALEYSGT-KRFVYVI 290
             V + F +    R+ PG  MSA++  P    P        +P+ AL      K+FV+V+
Sbjct: 251 YSVVLGFEDLKGFRVMPG--MSAKV-IPVADKPADENTLITLPLTALVPDNQGKQFVWVV 307

Query: 291 GEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVT 341
              N A++R V +G   +++VVI + L+ GE++++ G+ ++R+   V   T
Sbjct: 308 NAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358