Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND efflux system, membrane fusion protein from Sphingobium sp. HT1-2

 Score =  162 bits (411), Expect = 9e-45
 Identities = 105/350 (30%), Positives = 180/350 (51%), Gaps = 9/350 (2%)

Query: 5   TVLSLTLLTLLMNSAVLSAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAA 64
           + L + L+ L +       ++  +PPA+ V   ++   + + ++  VG   A + V ++A
Sbjct: 3   STLPVILVALCLAGCGGEKEKKARPPAL-VEAVAIAPTRFTDNVEAVGTALANEQVILSA 61

Query: 65  EVAGKVDMIAVQANQQVKKGQILIKL--DDDKAQAALVEAKAYLQDEQRKLTEYERLLKR 122
            V  ++D++       V KGQ++ ++    +KA+ A  EA A   D+Q K    + L  R
Sbjct: 62  PVTERIDVLNFTDGGFVSKGQVIARMAVGQEKAELAAAEATALQADQQLK--RIQALKSR 119

Query: 123 NAITPTEIDAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELL 182
              T   ++ Q A     +A  + A+A + D  I APF G V     S G  ++AG+ + 
Sbjct: 120 GFATGATVEQQIALANSARANADLARAGIGDRTIRAPFSGWVSLRTVSPGAVITAGTAIA 179

Query: 183 TLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRV 242
           T+ ++S ++LD  +PE  L  + +GM ++  S AWP+  F G++  +D  I+  T  +RV
Sbjct: 180 TVSDISRIKLDFTVPETRLSMIREGMPIKALSAAWPDRPFNGTIATIDPVIDPATRAVRV 239

Query: 243 RVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVS 302
           R   PNPD+ LKPGML++  +      +  +P  A+   G +RFV+V+ +   AKR +V 
Sbjct: 240 RAIMPNPDKALKPGMLLTVSVFSRERQSLGVPELAVIGDGDERFVFVL-DGRTAKRTKVE 298

Query: 303 LGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVEGRPLKKDDK 352
            G R    V I  G++ G++IV +G+V + D A    V + G     DDK
Sbjct: 299 TGIRQNGLVEILGGVKAGQQIVTEGVVKLTDGA---PVRLAGDKRGDDDK 345