Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  138 bits (348), Expect = 2e-37
 Identities = 88/316 (27%), Positives = 164/316 (51%), Gaps = 6/316 (1%)

Query: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89
           PA  V   + +  Q+++     G+L+A   V +AAE+ G++  IA ++ Q V  GQ+L++
Sbjct: 37  PATKVALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQ 96

Query: 90  LDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQA 149
           L+D   QA  V+ +A L++    L    +L   NA++   +D     V++ +  L   +A
Sbjct: 97  LNDAPEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEA 156

Query: 150 NLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMK 209
            +A   I APF G +G     +G++++AG  +++L ++S + ++  + E+  P++  G  
Sbjct: 157 LIAQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQV 216

Query: 210 VQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS 269
           +  + +A     F+  VVAVD  ++   L ++V+   PNP  +L+PGM    R+     S
Sbjct: 217 LALTVDAVRGQDFQARVVAVDPVVSTARL-VQVQAALPNPQGQLQPGMYAGVRLDAAQPS 275

Query: 270 API-IPVQALEYSGTKRFVYVIGED----NVAKRREVSLGARVENQVVIEKGLQIGEKIV 324
             + +P  A+ Y+   + V+V  +D        R +V+ G R + +V I  GL  G+++V
Sbjct: 276 TVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVV 335

Query: 325 VQGIVNMRDNARVSEV 340
           V G + + D   V  V
Sbjct: 336 VSGQLKLSDGMPVEPV 351