Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  165 bits (417), Expect = 2e-45
 Identities = 105/322 (32%), Positives = 172/322 (53%), Gaps = 10/322 (3%)

Query: 31  AISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKL 90
           A  V    V++ ++      VG L++ QSV +  E +G+V  I      +VK GQ+L++L
Sbjct: 51  APGVEVTRVKTIRLQDDAQAVGTLRSRQSVTLKPETSGRVARIVFADGARVKAGQLLVQL 110

Query: 91  DDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQAN 150
           DD   +A L +A+A L   +  L   + L+ +N +    ++  +A +++ +A++  A A 
Sbjct: 111 DDTLQRAELSQAQAQLSIARANLKRNQELVAQNFVAQRVVEESQANLQVAEAQVALADAR 170

Query: 151 LADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKV 210
           L  + ITAPF GTVG    + G +V  G  L+ L++ S++ +D ++PERY  QL+ G  V
Sbjct: 171 LQRMRITAPFAGTVGLRSINLGAYVKDGDSLVNLEDTSMLTVDFRLPERYQSQLAPGQVV 230

Query: 211 QGSSEAWPNVQFEGSVVAVDSRINQETLNLRVR-VHFPNPDQRLKPGMLMSARIHFPAIS 269
           Q   +A PN  FE  V+AVD  ++    ++ VR V  P  D  L+PGM     I F    
Sbjct: 231 QVQLDALPNRPFEAKVLAVDPLLDANGRSISVRAVMPPAADNVLRPGMFARVLIVFSVNE 290

Query: 270 -APIIPVQALEYSGTKRFVYVIGED-------NVAKRREVSLGARVENQVVIEKGLQIGE 321
            A ++P +AL     K++ YV+ E         +++R EV+LGAR  ++V +  GLQ G+
Sbjct: 291 RALVVPEEALVPQAGKQYAYVLDEQGEGDAKKRLSRRVEVALGARRGSEVEVVSGLQQGD 350

Query: 322 KIVVQGIVNM-RDNARVSEVTV 342
            +V+ G   + RD   V  V +
Sbjct: 351 AVVIAGQQRLQRDGTAVRVVNM 372