Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score =  130 bits (327), Expect = 6e-35
 Identities = 91/337 (27%), Positives = 164/337 (48%), Gaps = 23/337 (6%)

Query: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89
           P   V   +   Q + + L+ +G + A  +V + + V G++  +  Q  QQVK G +L +
Sbjct: 58  PLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALHFQEGQQVKAGDLLAE 117

Query: 90  LDDDKAQAALVEA-------KAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQA 142
           +D  + + AL +A       KA L + +R L  Y++L K N ++  E+DAQ+A V   + 
Sbjct: 118 IDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDAQQALVSETEG 177

Query: 143 RLNAAQANLADLH-------ITAPFDGTVGFIDFSRGKWVSAGSE--LLTLDNLSLMRLD 193
            + A +A++A          ITAP DG VG      G  +S+G    ++ +     + L 
Sbjct: 178 TIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLV 237

Query: 194 LQIPERYLPQLSKGMKVQGSS--EAWPNVQF----EGSVVAVDSRINQETLNLRVRVHFP 247
             +PE  +  + +  K       EAW         EG+++++D++I+  T  ++V+  F 
Sbjct: 238 FTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFN 297

Query: 248 NPDQRLKPGMLMSARIHFPAI-SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGAR 306
           N D  L P   ++AR+      +A +IP  AL+      FV+V+  +N   +  V+ G +
Sbjct: 298 NQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQ 357

Query: 307 VENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVE 343
              +VVI  G+  G+++V  GI  + + A+V  V  +
Sbjct: 358 DSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQ 394