Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., RND family efflux transporter, MFP subunit from Enterobacter asburiae PDN3

 Score =  131 bits (330), Expect = 3e-35
 Identities = 93/335 (27%), Positives = 165/335 (49%), Gaps = 27/335 (8%)

Query: 41  SQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALV 100
           ++ + + L+ +G + A  +V + + V G++  I  Q  QQVK G +L ++D  + + AL 
Sbjct: 69  NKAVPRYLTGLGTITAANTVTVRSRVDGQLMAIHFQEGQQVKAGDLLAEIDPSQFKVALA 128

Query: 101 EA-------KAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLAD 153
           +A       KA L + +R L  Y++L+K N ++  E+D Q++ V   Q  + A +A +A 
Sbjct: 129 QAQGQLAKDKATLANARRDLVRYQQLVKTNLVSRQELDTQQSLVSETQGTIKADEAAVAS 188

Query: 154 LH-------ITAPFDGTVGFIDFSRGKWVSAGSE--LLTLDNLSLMRLDLQIPERYLPQL 204
                    ITAP DG VG      G  +S+G    ++ +     + L   +PE  +  +
Sbjct: 189 AQLQLDWSRITAPIDGRVGLKQVDIGNQISSGDTTGIVVITQTHPIDLVFTLPESDIATV 248

Query: 205 ------SKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGML 258
                  KG+ V+    +      EGS++++D++I+  T  ++++  F N D  L P   
Sbjct: 249 VQAQKAGKGLVVEAWDRSNKQKLSEGSLLSLDNQIDTTTGTIKLKARFNNQDDALFPNQF 308

Query: 259 MSARIHFPAI-SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGL 317
           ++AR+      +A +IP  AL+      FV+V+ +DN   +  V  G +    VVI  GL
Sbjct: 309 VNARMLVATEENAVVIPTAALQMGNEGNFVWVLNDDNKVSKHLVKTGIQDSQTVVIAAGL 368

Query: 318 QIGEKIVVQGIVNMRDNARVSEVTVEGRPLKKDDK 352
             GE++V  GI  + + A+V  V     P K+ +K
Sbjct: 369 SAGERVVTDGIDRLTEGAKVEVV----EPAKQGEK 399