Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., multidrug efflux system, subunit A from Escherichia coli BL21

 Score =  130 bits (328), Expect = 5e-35
 Identities = 91/337 (27%), Positives = 165/337 (48%), Gaps = 23/337 (6%)

Query: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89
           P   V   +   Q + + L+ +G + A  +V + + V G++  +  Q  QQVK G +L +
Sbjct: 58  PLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAE 117

Query: 90  LDDDKAQAALVEA-------KAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQA 142
           +D  + + AL +A       KA L + +R L  Y++L+K N ++  E+DAQ+A V   + 
Sbjct: 118 IDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLVKTNLVSRQELDAQQALVSETEG 177

Query: 143 RLNAAQANLADLH-------ITAPFDGTVGFIDFSRGKWVSAGSE--LLTLDNLSLMRLD 193
            + A +A++A          ITAP DG VG      G  +S+G    ++ +     + L 
Sbjct: 178 TIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGIVVITQTHPIDLL 237

Query: 194 LQIPERYLPQLSKGMKVQGSS--EAWPNVQF----EGSVVAVDSRINQETLNLRVRVHFP 247
             +PE  +  + +  K       EAW         EG+++++D++I+  T  ++V+  F 
Sbjct: 238 FTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTLLSLDNQIDATTGTIKVKARFN 297

Query: 248 NPDQRLKPGMLMSARIHFPAI-SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGAR 306
           N D  L P   ++AR+      +A +IP  AL+      FV+V+  +N   +  V+ G +
Sbjct: 298 NQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVLNSENKVSKHLVTPGIQ 357

Query: 307 VENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVE 343
              +VVI  G+  G+++V  GI  + + A+V  V  +
Sbjct: 358 DSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQ 394