Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 384 a.a., Multidrug resistance protein MdtA from Azospirillum sp. SherDot2

 Score =  171 bits (433), Expect = 3e-47
 Identities = 98/318 (30%), Positives = 176/318 (55%), Gaps = 2/318 (0%)

Query: 22  SAKEPNQPPAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQV 81
           +AK P   P + V    V+   + ++++ VG L + +SV +  E+AG++  IA +  Q+V
Sbjct: 59  AAKPPGGAPPMPVEAAQVRVGTVERTVTAVGSLLSNESVVVRPEIAGRISEIAFKEGQRV 118

Query: 82  KKGQILIKLDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQ 141
            KG +L++LDD  A+A L +A+A +   + +L+  ++L+++N       +   A++   +
Sbjct: 119 AKGTVLVRLDDAIARATLAQAQASIAFSRAELSRADQLVRQNTGPLRNREQASAKLLADE 178

Query: 142 ARLNAAQANLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYL 201
           A +  A+A L    I APFDG +G    S G +V AG +++ L+++  ++LD ++PE +L
Sbjct: 179 AAVQLARAQLDKQVIAAPFDGVLGLRKASVGDFVQAGKDIVNLEDIDTLKLDFRVPEMFL 238

Query: 202 PQLSKGMKVQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSA 261
           P +  G  V+ + +A+    F+G+V A+D  ++     L +R   PNPD  L+PG+    
Sbjct: 239 PAVKVGQTVRVAVDAFGGRSFDGTVYAIDPLVDVNGRALAIRARVPNPDGSLRPGLFARV 298

Query: 262 RIHFPAI-SAPIIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIG 320
            +    +  A +IP QA+   G  +FV+ + +  V + R V LG R   +V I KGL  G
Sbjct: 299 SLTLTTVPDAVLIPEQAIVAFGKDQFVFKVVDGKVVQTR-VVLGERRNAEVEIAKGLAPG 357

Query: 321 EKIVVQGIVNMRDNARVS 338
           + +V  G + +RD   V+
Sbjct: 358 DMVVTAGQLKIRDGVPVT 375