Pairwise Alignments

Query, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Multidrug transporter MdtA from Alteromonas macleodii MIT1002

 Score =  155 bits (393), Expect = 1e-42
 Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 8/312 (2%)

Query: 34  VVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIKLDDD 93
           VVT+ ++    ++ +  VG  +A +S+ +   VA +V  I     Q V+KG++L++LDD 
Sbjct: 39  VVTKPIEFMNETRKVEAVGSAEAVRSIVLYPAVADEVTEINFVPGQTVEKGKVLVRLDDR 98

Query: 94  KAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQANLAD 153
           + Q AL  AK  L+D QR +       K+ A+  +E+D  R + ++ +  L  AQA+L D
Sbjct: 99  RQQTALKRAKLTLEDAQRTVERLASSYKQGAVPVSELDLARTQRDLAEVALEEAQADLQD 158

Query: 154 LHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGS 213
            HI APFDG VG  D   G  ++  + + TLDN S + ++ + PE  LP L     V  +
Sbjct: 159 RHIVAPFDGVVGITDVEVGDRINEQTVITTLDNRSKLFINFRAPEAALPVLLNAPNV--T 216

Query: 214 SEAWPNVQ--FEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAP 271
            E W + +      +  VDSRIN+    LR R    N   + +PGM     +        
Sbjct: 217 LEPWSDREKLVRAEIAQVDSRINEADRTLRARALLDNSSDQFRPGMSFRVNLSIEGDRFA 276

Query: 272 IIPVQALEYSGTKRFVYVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNM 331
            IP  AL +  T  +++ + ED  AKR +VS+  R+   +++   ++ G+ ++ +G+  +
Sbjct: 277 AIPEAALLWGATGAYIW-LAEDGKAKRVDVSVHQRLRGTILVSGDIEEGDTLISEGVQRL 335

Query: 332 RDNARVSEVTVE 343
           R      E+T E
Sbjct: 336 RTG---QEITTE 344