Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., DNA-binding transcriptional regulator CytR from Vibrio cholerae E7946 ATCC 55056

 Score =  106 bits (265), Expect = 7e-28
 Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 15/311 (4%)

Query: 6   TILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGGSQKVV 65
           T+ D+A+L+GV  +TVSR L N  KV   TR +VE+ + E+GY P+  A+ +R    K +
Sbjct: 3   TMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTI 62

Query: 66  GIIISRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKVLAKRQVDGVIVF 125
             I+  +  P  ++ +  +  A   HGY V++ +S   + + N+ + ++  +Q DG+++ 
Sbjct: 63  VAIVPDICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLL 122

Query: 126 GFTDIDHDALLSWQHRCVLLAMHSD-----EISSINYDNAGVIERALQHLAQKQLRDIAF 180
           G TD+  D     Q     + M  +     E+ +++ DN      A+ +L Q   + IA 
Sbjct: 123 G-TDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQ 181

Query: 181 IGVDPRDKTTGEQRLNAYLNWCVEHEIVAN--YQT-GQLHHESAYLLVDKVLT--EQTQA 235
           I   P+     + R   Y        I  N  Y T G    E+    V ++L   EQ  A
Sbjct: 182 IS-GPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA 240

Query: 236 IVCASDTLALGVI---KRLQELQRDDVVVTGVGGNELLSFLFPNIFSVDPGYREAGKLAA 292
           I C +DT+A+G I   KRL      D+ V G    +   +  P + ++     E G+ A 
Sbjct: 241 IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAM 300

Query: 293 DLLIEQLCGSD 303
            +++E L G D
Sbjct: 301 LMMLELLRGHD 311