Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  100 bits (248), Expect = 6e-26
 Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 22/316 (6%)

Query: 6   TILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGGSQKVV 65
           TI D+A L+G+  +TVS VL     V  + R KVE  I E  YVPS  A++++  S   +
Sbjct: 3   TIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTATI 62

Query: 66  GIIISRLDSPSENKAVSTMLQAFYAHGYDVVIMESQFSREKTNAHLKVLAKRQVDGVIVF 125
           G+++    +P   +    +  A   +GY V++  S  + +K  ++L+VL ++++DG++V 
Sbjct: 63  GLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLVVA 122

Query: 126 GFTDIDHDALLSWQHRCVLLAMHSDEISSINYDNAGVIER-----ALQHLAQKQLRDIAF 180
                D D L S       + +   E+  ++ D   +        A +HL +   RD+A+
Sbjct: 123 SVGQ-DDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVAY 181

Query: 181 IGVDPRDKTTGEQRLNAYLNWCVE--------HEIVANYQTGQLHHESAYLLVDKVLTEQ 232
           IG  P +    + RL+ +     E          +  ++ +   H  +A +L  K    +
Sbjct: 182 IG-GPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGK----R 236

Query: 233 TQAIVCASDTLALGVIKRLQELQ---RDDVVVTGVGGNELLSFLFPNIFSVDPGYREAGK 289
             AI   +D +  GV++   E       ++ V G    EL  +++P++ +V    RE G+
Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGE 296

Query: 290 LAADLLIEQLCGSDHG 305
            AA LL+ ++     G
Sbjct: 297 SAASLLLTRIATPRQG 312