Pairwise Alignments

Query, 316 a.a., HTH-type transcriptional regulator TreR from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., LacI family DNA-binding transcriptional regulator from Serratia liquefaciens MT49

 Score =  109 bits (272), Expect = 1e-28
 Identities = 93/315 (29%), Positives = 158/315 (50%), Gaps = 20/315 (6%)

Query: 6   TILDIARLSGVGKSTVSRVLTNDPKVKPETRAKVEQVIAESGYVPSKSAQTMRGGSQKVV 65
           TIL++A+ +GV K+TVSRVL+    V PE R +VE+ IAE+GY P+  A+ +   + + +
Sbjct: 3   TILEVAKRAGVSKATVSRVLSGSGYVGPEKRERVEKAIAETGYRPNLLARNLATKTTQTI 62

Query: 66  GIIISRLDSPSENKAVSTMLQA---FYAHGYDVVIMESQFSREKTNAHLKVLAKRQVDGV 122
           G++++     S N     M Q+      HG  +++ + + + E+  A ++ L   + DGV
Sbjct: 63  GLVVTN-TLYSGNYFSELMFQSARIMEEHGRQLILADGKHTAEEEKAAIQFLLDLRCDGV 121

Query: 123 IVF-GFTDI-DHDALLSWQHRCVLLAMHS----DEISSINYDNAGVIERALQHLAQKQLR 176
           I++  F  I + D ++S QH+  +L ++     ++   I  D       A++HL ++  R
Sbjct: 122 IIYPRFLSIAEMDEIIS-QHKQPILVINRRLRLNDSYCIFSDQHATSAAAVRHLIEQGHR 180

Query: 177 DIAFIGVDPRDKTTGEQRLNAYLNWCVEHEIVAN---YQTGQLHHESAYLLVDKVLTEQT 233
           DIAFI     D  TG +RL+ Y     E  I  N      G+ + +S    VD ++   +
Sbjct: 181 DIAFI-TGSLDSPTGLERLSGYKAALAEQGIAVNSALIVEGKWNAQSGMAAVDTLVASGS 239

Query: 234 --QAIVCASDTLALGVIKRLQELQ---RDDVVVTGVGGNELLSFLFPNIFSVDPGYREAG 288
              AIV ++D +A+G IKRL E Q      V V G     L  +  P++ S+     +  
Sbjct: 240 AFSAIVASNDEMAIGAIKRLTERQIPVPSAVSVIGFDDIPLAPYTIPSLSSMKMPVTDMI 299

Query: 289 KLAADLLIEQLCGSD 303
           K   + L+  L G +
Sbjct: 300 KETINRLVSMLDGGE 314